Table 2. Positively and negatively selected sites for human bocavirus strains originating from this study.
Method | Positive | Negative |
---|---|---|
SLAC | None | 29 sites |
FEL | 536, 546 | 34 sites |
FUBAR | 17, 40, 225, 361, 411, 421, 534, 535, 536, 546, 563 | 38 sites |
IFEL | 411, 546 | 17 sites |
MEME | 225, 361, 392, 396, 401, 409, 410, 411, 413, 421, 428, 546, 547, 556, 563 | - |
FEL: fixed-effects likelihood; FUBAR: fast unconstrained Bayesian approximation methods; IFEL: internal branch fixed-effects likelihood; MEME: mixed effects model of evolution; SLAC: single-likelihood ancestor.