Table 4. Preferential expression of (a) transcripts and (b) peptides belonging to variant surface glycoprotein-like genes.
| a) | Gene ID | CSP ID | BSF | EPI | MET | FC | Max. stage | |
| TvY486_0009580 | Fam24 | 34180.1 | 245.0 | 301 | 109.2 | BSF | ||
| TvY486_0018880 | Fam24 | 26001.7 | 20.1 | 20.8 | 106.7 | BSF | ||
| TvY486_0002880 | Fam23 | 22.7 | 2.5 | 3.20 | 10.0 | BSF | ||
| TvY486_0027380 | Fam23 | 201.1 | 30.1 | 37.3 | 7.5 | BSF | ||
| TvY486_0028170 | Fam23 | 212.4 | 32.3 | 40.0 | 7.3 | BSF | ||
| TvY486_0025310 | Fam23 | 188.6 | 36.4 | - | 5.6 | BSF | ||
| TvY486_0019720 | Fam23 | 107.2 | 23.9 | 38.0 | 4.6 | BSF | ||
| TvY486_0006330 | Fam23 | 147.1 | 33.9 | 42.1 | 4.4 | BSF | ||
| TvY486_0039540 | Fam23 | 848.1 | 203.8 | - | 4.2 | BSF | ||
| TvY486_0010070 | Fam23 | 69.3 | 18.2 | 21.2 | 3.7 | BSF | ||
| TvY486_0011440 | Fam23 | 54.0 | 16.6 | 16.2 | 2.9 | BSF | ||
| TvY486_0043550 | Fam23 | 97.3 | 30.1 | - | 2.8 | BSF | ||
| TvY486_0040490 | Fam23 | 111.9 | 36.9 | 36.7 | 2.5 | BSF | ||
| Gene ID | CSP ID | Peptide | iBAQ: | FC | Max. stage | |||
| b) | count | BSF | EPI | MET | ||||
| TvY486_0018880 | Fam24 | 15 | 22283050 | 817644.1 | 454910.3 | 48.9 | BSF | |
| TvY486_0009580 | Fam24 | 22 | 217715149 | 2295147 | 1824989 | 119.3 | BSF | |
| TvY486_0000810* | Fam23 | 2 | 51810.2 | 21467.7 | 9041.9 | 5.7 | BSF | |
| TvY486_0001860 | Fam25 | 1 | 44940.7 | 113671.8 | 26300.0 | 4.3 | EPI | |
| TvY486_0027560# | Fam24 | 1 | 44757.3 | 54295.2 | 124747.7 | 2.7 | MET | |
| TvY486_0041140 | Fam25 | 1 | 49076.9 | 117452 | 61305.4 | 2.3 | EPI |
NB: For transcript abundance, details are provided for pairwise comparisons that resulted in significant differences (in some cases involving a single gene in two comparisons). Developmental stages are abbreviated with BSF (bloodstream form), EPI (epimastigote), MET (metacyclic). Differential expression is described by fold change (FC). q < 0.05 in all cases. Peptide count refers to the total number of unique peptides observed for a given protein. Note that peptides mapping to * could equally map to other, identical gene models: TvY486_0000330; TvY486_0028900; TvY486_0002800; TvY486_0003200; TvY486_0005340; TvY486_0005830; TvY486_0008280; TvY486_0031250; TvY486_0031440; TvY486_0039630; TvY486_0042400. Also peptides mapping to # could equally map to these other, identical gene models: TvY486_0009200; TvY486_0015630; TvY486_0016270; TvY486_0031530; TvY486_0031920; TvY486_0031980; TvY486_0042360