Table 1.
Primer pairs employed to amplify chicken cytoplasmic beta-actin (actb), beta-2 microglobulin (β2m), glyceraldehyde 3-phosphate dehydrogenase (gapdh) and tata-binding protein (tbp) gene fragments, which were evaluated here as reference sequences for qPCR normalisation.
| Target gene | Primer identity | Sequence (5′ to 3′) | Theoretical annealing temperature (°C) | Amplicon size (bp) | Primer references | GenBank accession nos. for locus | Primer location (from 5′ end) | Gene references |
|---|---|---|---|---|---|---|---|---|
| actb | Forward — actbF | GAGAAATTGTGCGTGACATCA | 60 | 152 | [58] | X00182 | 3003–3023 | [41] |
| Reverse — actbR | CCTGAACCTCTCATTGCCA | 60 | 3136–3154 | |||||
| β2m | Forward — b2mF | GCAAACCTCTGTCTTTCGGC | 60 | 126 | this study | Z48922 | 3191–3210 | [42] |
| Reverse — b2mR | ATGTTCAGACCAGAGCCTGC | 60 | 3297–3316 | |||||
| gapdh | Forward — GAPDH_For1 | CGCAAGGGCTAGGACGG | 60 | 98 | [59] | M11213 | 220–236 | [43] |
| Reverse — GAPDH_Rev1 | GCGCTCTTGCGGGTACC | 60 | 301–317 | |||||
| tbp | Forward — tbpF | TAGCCCGATGATGCCGTAT | 62 | 147 | [58] | NM_205103 | 144–162 | [44] |
| Reverse — tbpR | GTTCCCTGTGTCGCTTGC | 60 | 273–290 |