Table 1.
Overall features of LTR-RTEs identified in E. grandis genome
| Superfamilies | Families | Lineages | LTR length (bp) | LTRs Ida | LTR-RTE size (bp) | Copy number |
|---|---|---|---|---|---|---|
| Copia | RLC_egAle_1 | Ale | 458/457 | 99 % | 5509 | 12 |
| RLC_egAle_2 | Ale | 434/434 | 96 % | 5395 | 4 | |
| RLC_egMax_1 | Maximus | 904/903 | 98 % | 9670 | 623 | |
| RLC_egBianca_1 | Bianca | 424/423 | 99 % | 5008 | 77 | |
| RLC_egAngela_1 | Angela | 162/161 | 93 % | 11280 | 1 | |
| RLC_egAngela_2 | Angela | 392/392 | 92 % | 7473 | 67 | |
| RLC_egIvana_1 | Ivana | 247/239 | 93 % | 4440 | 49 | |
| Gypsy | RLG_egTat_1 | Tat | 2199/2257 | 93 % | 18300 | 15 |
| RLG_egTekay_1 | Tekay | 555/552 | 96 % | 12159 | 7 |
aId: identity among 5’ and 3’LTRs