Table 5.
Codon usage of PCGs in R. menciana mitogenome
| Codon | No. of codons | RSCUa | Codon | No. of codons | RSCUa |
|---|---|---|---|---|---|
| AAA(Lys) | 92 | 1.69 | TAAb | 10 | 1.67 |
| AAG(Lys) | 17 | 0.31 | TAGb | 2 | 0.33 |
| AAC(Asn) | 39 | 0.31 | TAC(Tyr) | 27 | 0.28 |
| AAT(Asn) | 211 | 1.69 | TAT(Tyr) | 167 | 1.72 |
| ACA(Thr) | 78 | 1.88 | TGA(Trp) | 83 | 1.77 |
| ACG(Thr) | 5 | 0.12 | TGG(Trp) | 11 | 0.23 |
| ACC(Thr) | 22 | 0.53 | TGC(Cys) | 6 | 0.38 |
| ACT(Thr) | 61 | 1.47 | TGT(Cys) | 26 | 1.63 |
| AGA(Ser) | 86 | 2.21 | TCA(Ser) | 76 | 1.95 |
| AGG(ser) | 2 | 0.05 | TCG(Ser) | 2 | 0.05 |
| AGC(Ser) | 3 | 0.08 | TCC(Ser) | 23 | 0.59 |
| AGT(Ser) | 31 | 0.8 | TCT(Ser) | 88 | 2.26 |
| ATA(Met) | 248 | 1.78 | TTC(Phe) | 37 | 0.2 |
| ATG(Met) | 30 | 0.22 | TTT(Phe) | 338 | 1.8 |
| ATC(Ile) | 43 | 0.2 | TTA(Leu) | 442 | 4.74 |
| ATT(Ile) | 394 | 1.8 | TTG(Leu) | 32 | 0.34 |
| GTA(Val) | 51 | 1.32 | CTA(Leu) | 51 | 0.55 |
| GTG(Val) | 10 | 0.26 | CTG(Leu) | 2 | 0.02 |
| GTC(Val) | 8 | 0.21 | CTC(Leu) | 6 | 0.06 |
| GTT(Val) | 86 | 2.22 | CTT(Leu) | 27 | 0.29 |
| GAA(Glu) | 53 | 1.49 | CAA(Gln) | 54 | 1.71 |
| GAG(Glu) | 18 | 0.51 | CAG(Gln) | 9 | 0.29 |
| GAC(Asp) | 7 | 0.21 | CAC(His) | 17 | 0.49 |
| GAT(Asp) | 60 | 1.79 | CAT(His) | 53 | 1.51 |
| GCA(Ala) | 38 | 1.32 | CCA(Pro) | 51 | 1.62 |
| GCG(Ala) | 4 | 0.14 | CCG(Pro) | 1 | 0.03 |
| GCC(Ala) | 14 | 0.49 | CCC(Pro) | 24 | 0.76 |
| GCT(Ala) | 59 | 2.05 | CCT(Pro) | 50 | 1.59 |
| GGA(Gly) | 86 | 1.78 | CGA(Arg) | 31 | 2.34 |
| GGG(Gly) | 41 | 0.85 | CGG(Arg) | 3 | 0.23 |
| GGC(Gly) | 7 | 0.15 | CGC(Arg) | 2 | 0.15 |
| GGT(Gly) | 59 | 1.22 | CGT(Arg) | 17 | 1.28 |
a Relative synonymous codon usage.
b Stop codon.