Table 1.
The ATGs in tobacco
| Group | Gene name | Accession no. | ORF (bp) | Predicated protein information |
||||
|---|---|---|---|---|---|---|---|---|
| No. of amino acids | Mw (kDa) | PI | Signal peptide | Predicted function | ||||
| ATG1 | NtATG1a | KR336556 | 2,091 | 696 | 77.3 | 7.67 | – | Serine/threonine-protein kinase |
| NtATG1b | KR336557 | 2,073 | 690 | 76.7 | 6.13 | – | Serine/threonine-protein kinase | |
| NtATG1c | KR336558 | 849 | 283 | 31.9 | 6.50 | – | Serine/threonine-protein kinase | |
| ATG2 | NtATG2 | KR336559 | 5,943 | 1,980 | 217.2 | 5.27 | – | Autophagy-related protein 2 |
| ATG3 | NtATG3 | KR336560 | 945 | 314 | 35.6 | 4.7 | – | Autophagocytosis-associated protein 3 |
| ATG4 | NtATG4 | KR336561 | 1,188 | 396 | 43.7 | 4.75 | – | Peptidase family C54 |
| ATG5 | NtATG5 | KR336562 | 1,116 | 371 | 41.3 | 5.06 | – | Autophagy protein Apg5 |
| ATG6 | NtATG6 | KR336563 | 1,674 | 557 | 5.57 | 62.8 | – | Autophagy protein Apg6 |
| ATG8 | NtATG8a | KR336564 | 360 | 119 | 13.7 | 9.1 | – | Autophagy protein Atg8 |
| NtATG8b | KR336565 | 369 | 122 | 14 | 6.61 | – | Autophagy protein Atg8 | |
| NtATG8c | KR336566 | 369 | 122 | 14 | 7.85 | – | Autophagy protein Atg8 | |
| NtATG8d | KR336567 | 372 | 123 | 14.1 | 6.61 | – | Autophagy protein Atg8 | |
| NtATG8e | KR336568 | 372 | 123 | 14.1 | 6.61 | – | Autophagy protein Atg8 | |
| ATG9 | NtATG9 | KR336569 | 2,574 | 857 | 99 | 6.32 | – | Autophagy protein Apg9 |
| ATG10 | NtATG10 | KR336570 | 756 | 251 | 28.3 | 4.85 | – | Autophagocytosis-associated protein |
| ATG13 | NtATG13a | KR336571 | 1,827 | 608 | 67.4 | 8.62 | – | Autophagy-related protein 13 |
| NtATG13b | KR336572 | 1,815 | 604 | 66.7 | 8.68 | – | Autophagy-related protein 13 | |
| NtATG13c | KR336573 | 1,827 | 608 | 67.5 | 8.62 | – | Autophagy-related protein 13 | |
| ATG18 | NtATG18a | KR336574 | 2,316 | 771 | 83.1 | 8.63 | – | WD-40 repeat containing protein |
| NtATG18b | KR336575 | 2,586 | 861 | 93.1 | 8.33 | – | WD-40 repeat containing protein | |
| NtATG18c | KR336576 | 2,310 | 769 | 83.8 | 7.30 | – | WD-40 repeat containing protein | |
| NtATG18d | KR336577 | 1,251 | 416 | 45.8 | 7.15 | – | WD-40 repeat containing protein | |
| NtATG18e | KR336578 | 1,281 | 426 | 47.8 | 8.27 | – | WD-40 repeat containing protein | |
| NtATG18f | KR336579 | 912 | 303 | 33.5 | 8.88 | – | WD-40 repeat containing protein | |
| ATG20 | NtATG20 | KR336580 | 1,206 | 401 | 46.1 | 7.68 | – | Sorting nexin 1-like protein |
| VTI12 | NtVTI12a | KR336581 | 666 | 221 | 25 | 9.18 | – | Vesicle transport v-SNARE protein |
| NtVTI12b | KR336582 | 666 | 221 | 24.8 | 8.47 | – | Vesicle transport v-SNARE protein | |
| VPS15 | NtVPS15 | KR336583 | 4,659 | 1,552 | 173.1 | 6.32 | – | Serine/threonine-protein kinase |
| VPS34 | NtVPS34 | KR336584 | 2,445 | 814 | 93.2 | 6.33 | – | Phosphoinositide 3-kinase |
| TOR | NtTOR | KR336585 | 7,782 | 2,593 | 291.8 | 6.90 | – | Serine/threonine-protein kinase |