Table 5a.
Distribution of the 15 common motifs in three of the monocot species in promoters, within genes, and 3′ UTRs.
| Motif | O. sativa japonica promoter (p = 1.1e − 4) | O. sativa japonica gene | O. sativa japonica 3′ UTR (p = 1.3e − 4) | O. sativa indica promoter (p = 6.7e − 4) | O. sativa indica gene | O. sativa indica 3′ UTR (p = 0.001) | B. distachyon promoter (p = 0.0017) | B. distachyon gene | B. distachyon 3′ UTR (p = 0.0016) | Z. mays promoter (p = 2.8e − 9) | Z. mays gene | Z. mays 3′ UTR (p = 1.9e − 5) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AAAAAAAA | 9704 (35.77%) | 7490 (27.61%) | 9930 (36.6%) | 16932 (39.88%) | 8504 (20.03%) | 17018 (40.08%) | 43339 (43.53%) | 18516 (18.59%) | 37700 (37.86%) | 17139 (33.3%) | 15953 (31%) | 18365 (35.68%) |
| AAAAAGAA | 2203 (35.44%) | 1715 (27.59%) | 2297 (36.95%) | 3418 (38.53%) | 2069 (23.32%) | 3384 (38.14%) | 11752 (39.67%) | 6936 (23.41%) | 10936 (36.91%) | 11730 (33.76%) | 11156 (32.11%) | 11856 (34.12%) |
| AAAAGAAA | 2601 (35.28%) | 2068 (28.05%) | 2702 (36.65%) | 3989 (38.47%) | 2385 (23%) | 3994 (38.52%) | 13977 (39.81%) | 8380 (23.87%) | 12747 (36.31%) | 13282 (34%) | 12455 (31.88%) | 13320 (34.1%) |
| AAAATAAA | 2839 (35.63%) | 2186 (27.44%) | 2941 (36.91%) | 4780 (42.49%) | 2200 (19.55%) | 4269 (37.95%) | 11265 (38.79%) | 7550 (25.99%) | 10225 (35.21%) | 12529 (33.94%) | 11713 (31.73%) | 12667 (34.31%) |
| AAAGAAAA | 2549 (35.57%) | 2014 (28.1%) | 2602 (36.31%) | 3971 (38.76%) | 2366 (23.09%) | 3906 (38.13%) | 14279 (39.81%) | 8569 (23.89%) | 13012 (36.28%) | 13220 (33.98%) | 12425 (31.94%) | 13255 (34.07%) |
| AAATAAAA | 2562 (36.46%) | 1911 (27.19%) | 2553 (36.33%) | 4024 (41.28%) | 2010 (20.62%) | 3712 (38.08%) | 10116 (38.35%) | 6900 (26.15%) | 9362 (35.49%) | 11660 (33.62%) | 11041 (31.84%) | 11975 (34.53%) |
| AAGAAAAA | 2379 (35.15%) | 1922 (28.4%) | 2466 (36.44%) | 3719 (38.68%) | 2169 (22.56%) | 3726 (38.75%) | 13257 (39.94%) | 7871 (23.71%) | 12057 (36.33%) | 11076 (33.46%) | 10595 (32.01%) | 11423 (34.51%) |
| AGAGAGAG | 2551 (36.59%) | 1836 (26.33%) | 2584 (37.06%) | 4628 (48.11%) | 1646 (17.11%) | 3344 (34.76%) | 10559 (50.19%) | 3682 (17.5%) | 6797 (32.3%) | 10652 (33.9%) | 10039 (31.95%) | 10723 (34.13%) |
| TTCTTTTT | 2218 (36.02%) | 1758 (28.55%) | 2181 (35.42%) | 3418 (39.22%) | 1943 (22.3%) | 3352 (38.47%) | 11210 (38.79%) | 7047 (24.38%) | 10642 (36.82%) | 11767 (34.3%) | 11088 (32.32%) | 11450 (33.37%) |
| TTTATTTT | 2922 (37.1%) | 2150 (27.29%) | 2804 (35.6%) | 4647 (42.39%) | 2169 (19.78%) | 4145 (37.81%) | 11273 (38.73%) | 7516 (25.82%) | 10312 (35.43%) | 12345 (34.3%) | 11420 (31.73%) | 12223 (33.96%) |
| TTTCTTTT | 2657 (36.71%) | 2031 (28.06%) | 2548 (35.21%) | 4025 (39.63%) | 2296 (22.61%) | 3833 (37.74%) | 13510 (39.04%) | 8483 (24.51%) | 12608 (36.43%) | 13187 (34.42%) | 12412 (32.4%) | 12709 (33.17%) |
| TTTGTTTT | 1778 (36.12%) | 1396 (28.36%) | 1748 (35.51%) | 2784 (38.12%) | 1758 (24.07%) | 2761 (37.81%) | 10184 (37.63%) | 7230 (26.72%) | 9647 (35.65%) | 12370 (33.61%) | 11994 (32.59%) | 12441 (33.8%) |
| TTTTATTT | 2488 (36.49%) | 1947 (28.55%) | 2383 (34.95%) | 3953 (41.83%) | 1883 (19.92%) | 3614 (38.24%) | 10097 (38.3%) | 6885 (26.11%) | 9378 (35.57%) | 11546 (34.34%) | 10712 (31.86%) | 11356 (33.78%) |
| TTTTCTTT | 2631 (36.65%) | 1983 (27.62%) | 2564 (35.72%) | 3997 (39.41%) | 2292 (22.59%) | 3853 (37.99%) | 14112 (39.71%) | 8669 (24.39%) | 12753 (35.88%) | 13030 (34.1%) | 12358 (32.34%) | 12818 (33.54%) |
| TTTTTCTT | 2464 (36.23%) | 1899 (27.92%) | 2437 (35.83%) | 3807 (39.83%) | 2104 (22.01%) | 3645 (38.14%) | 12886 (39.24%) | 8168 (24.87%) | 11784 (35.88%) | 11114 (34.54%) | 10423 (32.39%) | 10639 (33.06%) |
| TTTTTTTT | 9638 (36.22%) | 7599 (28.56%) | 9366 (35.2%) | 16845 (40.59%) | 8570 (20.65%) | 16076 (38.74%) | 43035 (43.19%) | 18886 (18.95%) | 37706 (37.84%) | 17833 (34.62%) | 16465 (31.96%) | 17210 (33.41%) |