Table 2.
Quality assessment of microarray hybridization reproducibility and detection rate for samples studied in this work.
| Experiment | Arabidopsis | Sample | %CV(*) | Detection rate | GEO file |
|---|---|---|---|---|---|
| Repeat-1 | Col | 1 | 7.40 | 70.47 | GSM1330673 |
| sdg25 | 2 | 4.52 | 70.58 | GSM1330674 | |
| sdg26 | 3 | 3.93 | 69.44 | GSM1330675 | |
| sdg25 sdg26 | 4 | 7.17 | 65.57 | GSM1330676 | |
| atx1 | 5 | 6.07 | 72.13 | GSM1330677 | |
| sdg26 atx1 | 6 | 5.07 | 75.74 | GSM1330678 | |
| clf | 7 | 4.50 | 76.60 | GSM1330679 | |
| sdg26 clf | 8 | 5.61 | 72.02 | GSM1330680 | |
| ldl1 ldl2 | 9 | 10.69 | 72.51 | GSM1330681 | |
| sdg25 ldl1 ldl2 | 10 | 5.97 | 73.48 | GSM1330682 | |
| sdg26 ldl1 ldl2 | 11 | 6.64 | 71.34 | GSM1330683 | |
| Repeat-2 | Col | 12 | 5.52 | 70.18 | GSM1330684 |
| sdg25 | 13 | 3.22 | 75.06 | GSM1330685 | |
| sdg26 | 14 | 3.80 | 78.41 | GSM1330686 | |
| sdg25 sdg26 | 15 | 9.75 | 70.20 | GSM1330687 | |
| atx1 | 16 | 2.83 | 76.88 | GSM1330688 | |
| sdg26 atx1 | 17 | 3.09 | 76.88 | GSM1330689 | |
| clf | 18 | 4.47 | 76.22 | GSM1330690 | |
| sdg26 clf | 19 | 8.57 | 73.12 | GSM1330691 | |
| ldl1 ldl2 | 20 | 3.17 | 75.81 | GSM1330692 | |
| sdg25 ldl1 ldl2 | 21 | 2.33 | 76.61 | GSM1330693 | |
| sdg26 ldl1 ldl2 | 22 | 9.97 | 72.81 | GSM1330694 | |
| Repeat-3 | Col | 23 | 6.84 | 70.20 | GSM1330695 |
| sdg25 | 24 | 9.19 | 69.06 | GSM1330696 | |
| sdg26 | 25 | 3.81 | 74.97 | GSM1330697 | |
| sdg25 sdg26 | 26 | 3.39 | 75.79 | GSM1330698 | |
| atx1 | 27 | 3.96 | 74.84 | GSM1330699 | |
| sdg26 atx1 | 28 | 4.50 | 77.53 | GSM1330700 | |
| clf | 29 | 3.86 | 72.12 | GSM1330701 | |
| sdg26 clf | 30 | 3.90 | 76.70 | GSM1330702 | |
| ldl1 ldl2 | 31 | 3.54 | 76.34 | GSM1330703 | |
| sdg25 ldl1 ldl2 | 32 | 4.26 | 75.76 | GSM1330704 | |
| sdg26 ldl1 ldl2 | 33 | 3.70 | 76.52 | GSM1330705 |
(*) %CV indicates for percent coefficient of variation.