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. 2014 Aug 1;2:226–229. doi: 10.1016/j.gdata.2014.07.006

Table 1.

List of the differentially expressed genes between Twin-N-iPSCs and Twin-DS-iPSCs.

Conservative list of 624 upregulated and 580 downregulated genes expressed in Twin-DS-iPSCs in comparison with Twin-N-iPSCs obtained with the statistical R packages EdgeR and DESeq (with a Bonferroni-corrected P-value lower than 0.01).

Conservative list of 580 downregulated genes expressed in Twin-DS-iPSCs in comparison with Twin-N-iPSCs (with a Bonferroni-corrected P-value lower than 0.01). Conservative list of 624 upregulated genes expressed in Twin-DS-iPSCs in comparison with Twin-N-iPSCs (with a Bonferroni-corrected P-value lower than 0.01).
LOC145845, GPR116, XIST, TSIX, HOXA2, DPP6, FAM181A, MMRN1, SOX1, POU3F2, DMRT2, RXRG, HOXB3, GALP, DLX1, RFX4, HGC6.3, NKX2-3, APLNR, SCRG1, HOTAIRM1, RHOJ, HOXB2, NR2F1, SERPINA3, CLEC1A, LOC440925, SOX17, H19, DKK2, SP5, VCAM1, CLEC3A, SMOC1, CLDN16, WNT1, NTRK2, TBX15, BMP5, CDH5, OTOF, FGF3, MX2, LRRN3, RD3, HABP2, BCHE, EPHA3, EYA4, ISLR2, CDH10, CCDC33, PAX3, LOC283731, DACH1, FLJ31485, COL2A1, BAHCC1, PCDH10, OLIG3, LRRC7, CDH6, RFTN2, CYTL1, SPATA16, ATOH8, ASXL3, DLX2, LGR5, GBX2, MAPK10, SLITRK1, CLEC18B, EOMES, PAX2, ZBTB16, SP8, GLRA1, LOC339535, F13A1, SOX5, RNASE1, AFF3, CCDC48, EGFLAM, UNC5C, GATA4, FZD10, FGF17, NCALD, NCRNA00261, GDF10, MEIS2, CNTFR, NDNF, APOLD1, CDH9, LRRC17, TLR4, EBF2, MGP, MEF2C, ZEB2, FOXA1, SERPINA5, RNF165, GATA6, TAGLN3, FST, GJA5, SLC6A16, ARHGDIB, SH3TC1, LOC149837, FGF9, SULT1C4, FOXA2, C20orf103, ANGPTL1, MTTP, EGR3, NEFM, KCNJ16, SLCO1C1, NKAIN2, ST8SIA2, SOX6, ZNF503, SSPO, EGR2, CDH20, MSX1, SOX9, PPP1R14C, RWDD2B, IGF2AS, TRPC4, RBMS3, WDR52, EPHB3, CXXC4, FBLN7, WDR60, LOC100506385, FZD2, ZNF703, FZD1, CRB2, CX3CL1, TSHZ1, IHH, CD93, GAD1, EFNB1, HNMT, C10orf140, ZNF521, HOGA1, CDH2, CNTN3, CDKN1C, SPOCK3, ADAMTS9, RAI1, LHX1, LOC100130855, MUM1L1, C5, BOC, WLS, KIAA1456, S1PR1, PYGO1, SHOX2, BEAN1, LRP2, LOC284276, THPO, SYNPO, DIO3, RNF212, ST6GALNAC5, EPHA4, USP3, STEAP4, TBX10, FLRT3, DRP2, SCN1A, PAX8, SLC9A9, C1orf213, GLYATL2, HMGCLL1, SLC8A3, ZNF467, F2RL2, IER5L, SULT1A1, SULT1A2, ZNF436, MECOM, LOC646999, TWIST1, SLITRK5, IL2RB, CLDN18, LIX1L, CHRD, TBX20, SLC44A5, SATB2, TMEM121, WNT10B, LOC100505576, IGFBP5, CHRNA9, RBM24, PKNOX2, C15orf2, EDNRB, FGFBP3, LOC144571, FOSB, PDE10A, TRIL, CCDC146, ACCN2, ZNF382, KCNQ1, FIGF, LOC386597, FAM65B, SDK2, KLHL4, GLT25D2, LOC100289178, PREX1, GUSBP1, RIMBP3, TBX5, DOCK10, LHFP, CRABP1, RHOB, LSAMP, NRGN, NRP2, TLR5, NR2F2, ASB9, NFIA, CCDC125, GLDN, TMPRSS5, NCRNA00245, C1QTNF3, COLQ, ZEB1, C6orf118, CHD7, HHAT, SIX1, SCUBE3, DUSP4, SETBP1, SEZ6L, LOC100505881, IQSEC3, BTBD17, VASH1, SORCS2, C5orf38, TMEM169, FLI1, ADCY8, PMFBP1, LYPD1, FRMD4A, RGAG4, MLLT3, SP140L, CHCHD2, C3orf70, DUSP27, PHC2, ZNF518B, PDE4D, MLLT6, MBNL2, FAM38B, C14orf80, NOVA1, PRR4, COL11A1, PRMT8, LGI4, DNAH9, POMZP3, IRX2, DAGLA, MATN3, SDSL, C15orf38, CDH4, PCDHGB6, SRCIN1, SIM2, GYPC, FRMD4B, ONECUT2, STK31, HTRA3, LOC100506190, COL13A1, TMEM132E, EFNB2, FHOD3, CSRNP3, WFIKKN1, CITED1, CAMK2D, PMP22, SYTL2, DENND2A, SOCS3, ZNF704, COLEC12, PRR5L, PDK1, TNFAIP6, DCHS1, PCDHGC4, CUEDC1, FIGNL2, TET2, TBC1D9, PNMA2, GRASP, CTCFL, EFNA5, SNCG, LIMCH1, GSTM3, PCDHGC5, RP9P, LIPG, PCDHGC3, SEMA3A, CRNDE, SLC35F1, KMO, ZADH2, PCDHGA10, PCDHGA9, LRRC27, PCDHGA2, PCDHGA1, BAI1, PCDHGA5, PCDHGA7, PCDHGB1, GFRA2, PCDHGA8, PIK3R1, MGC45800, CPNE8, PCDHGB3, LOC255480, PCDHGA3, EDNRA, PCDHGB2, ARRB1, MXRA5, PCDHGA6, PCDHGB7, ZSWIM6, PCDHGA12, PLEKHA4, BTG2, WIPF1, SOX10, PCDHGA4, IFT140, MDFIC, LOC283624, PCDHGB4, TNRC18, KIAA0101, TRIB2, PCDHGB5, SERTAD4, COL9A2, RNASEL, SYT12, ARC, ID3, ZIC2, IFITM2, LPAR6, ESPNL, HECTD2, H2AFY2, CD99L2, PCDHGA11, NIN, STK32B, SDC2, MN1, ZNF664, COL5A2, SDC3, LPHN2, RNF175, LGALS3BP, SPRY2, CPE, APBA2, ANKRD6, CPXM1, SPRY1, C11orf9, SSBP2, TMSB15A, FZD3, CADM1, NTN1, HTR7, ANTXR2, UHRF1, CCDC167, PCDH18, FAM84A, FKBP7, AADAT, TTC28, BMI1, CDK6, S1PR3, TTC3, PALLD, COMMD3-BMI1, ADAMTS10, KLF12, H2AFY, LMF1, OPN3, TTC3P1, SFRP1, LOC730101, WDR90, FAM115A, MXD4, KIAA1644, FAM89B, CCNG2, ITPKB, TCHP, ST3GAL3, MEX3B, BCL7A, ZNF862, ZNF624, DNAJC15, HEG1, COL4A2, SRRM5, EFS, LCOR, H1F0, MDFI, ALG10B, ENC1, DACT3, SPSB4, SUFU, RNF144A, RNF19A, ANGPTL2, PFKFB4, CD47, GPR153, ITGA4, SEMA5A, PIK3R3, COL9A1, CARD8, ZHX2, ARHGEF40, ELFN1, ZNF280C, C5orf24, GPR161, MCF2L, CAP2, GPSM1, CDK19, CCDC80, GSTA4, PGAP1, KDM6B, CCDC50, ULK2, CCND2, SESTD1, ADAMTS4, SENP7, SMAD3, CSF1, DDHD2, MAP1B, DENND5B, TCF12, YPEL1, PCBP4, SEMA6C, EMILIN1, CPNE2, IGFBP2, MAP7D1, HDAC6, KLF6, JUN, MSI1, ODZ3, APPBP2, FAM176B, C1RL, TMEM123, RGMA, CHD3, MEIS3P1, VIM, FAM113A, MEIS3, CSPG4, PLEKHO1, C6orf89, GPR173, KLF3, DOCK1, NAB1, LOXL2, F2R, ZFP90, SLC35E2, CMTM3, GPX7, LOXL1, LPIN2, SVIL, BTBD6, PDLIM7, TYMS, SHF, ENOSF1, RALGDS, B3GALNT1, GALC, B3GNT5, DOCK7, ZIC5, CDK14, ITGA5, MEGF6, FAM172A, ST5, PAM, STK40, ZMIZ1, EGLN1, JAG1, BNIP3L, UBE2J1, EMID2, BAZ1A, ZNF740, COL4A1, HOOK3, TFDP2. MTHFD1, SLC1A5, PRR13, KIAA0368, TWISTNB, EIF3B, LIN28A, PODXL, DNAJB6, FOXO1, URB1, TPST2, SALL4, MTL5, CARS, GGCT, AKIRIN1, ACADSB, ZNF134, FAM98A, FAM83G, CLU, ZNF770, VOPP1, RRP12, CDCA7L, PDZD2, GART, SGMS1, IPW, CXADR, ANKRD33B, PFKFB2, CPVL, RAB7L1, PRPS2, ZNF101, MRPS21, RBPMS2, MAD2L2, IDH3A, NME2, KIAA0415, COL9A3, RBBP7, ZNF605, ZNF695, EIF2S3, TBC1D8, PAR-SN, BNC2, TBC1D23, KIAA1543, C21orf59, GCNT2, NFKBIB, C20orf27, C1orf183, PSMA2, MID1IP1, DDX21, CSTB, AARS, MREG, ITPK1, FAM110A, ABCA1, PRKCB, LOC643988, TEX15, CBS, SLC35F2, EDEM2, SESN2, TRIM14, DCN, AEN, DIAPH2, HOOK1, SLC39A14, DPP4, CDS1, ENPP1, B3GNT7, RLTPR, SLC4A5, CLDN6, CCRN4L, PPAP2A, FOXA3, RNF125, ZNF589, MTHFD2, ELOVL4, WIPF3, FBXO41, TBRG4, DRAM1, NUDT6, SPSB2, EIF2S2, PRKAR2B, PHC1, ASTN2, EHHADH, FDXR, USP28, CEBPB, PPARGC1B, PACSIN3, MRPL32, USO1, PPIC, FAM160A1, MRPS17, INADL, MYO1E, EPHA1, WFDC2, CD24, PWP2, GRTP1, SKA3, SYT14, PPM1H, ACOT8, MTA3, DND1, GNAO1, CILP2, KCNS3, GLDC, FGFR4, F11R, C1QTNF1, POLR3G, PSPH, TFAP2C, OLFM2, GREM1, TARS, CCDC69, B3GALT5, CDC42BPG, FOXH1, VWDE, TOMM7, FAM155B, GCH1, TMEM132D, VSNL1, SIRT1, SEMA4A, DPPA4, ZBTB3, ATCAY, FUT1, ALDH1L2, FOSL1, TJP2, SLC44A1, GRM4, ZNF85, TMEM200A, NPTXR, JARID2, GLI1, NACAD, PMAIP1, LLGL2, KCTD14, MBP, FKBP4, ZNF470, HCN2, FBXO27, RBM47, CYCS, POU5F1P3, CHST4, PLS3, RIPK4, SYNGR3, YBX2, SGK1, NFE2L3, PAIP2B, POU5F1B, C8orf44-SGK3, ASNS, SLC7A5, PDK3, LOC100505761, SLC24A2, SLC43A1, GALNT6, ZNF625, CADPS2, MYC, ZNF525, ZNF613, SCAMP5, RYR1, C8orf42, ASS1, ADM2, CCDC3, LOC100506930, ZNF483, DEPTOR, UGP2, FGF2, RAP1GAP2, GNPTAB, PPP2R2C, FZD5, SKIL, SYT13, HPSE, C19orf66, VSIG10, TMEM184A, PRKCQ, RASGRP2, TRIM6, SPR, GARS, CGNL1, UGT3A2, USP44, OSBPL10, CGN, MAFK, UPP1, MRS2P2, MT1X, ZNF398, PHLDA3, INPP5F, NMNAT2, PRSS16, SLCO4C1, ZYG11A, SLC7A3, ZSCAN10, APOE, MYBPC2, MRM1, CCDC64, MRS2, RARRES2, ARHGEF19, NANOG, PDLIM1, KCNC3, SPINT2, CARD11, COL10A1, TMEM38A, SYT3, TXLNG, PPL, ELOVL7, TUBA4A, COMMD7, FRAT2, MFSD6, HERC6, RASIP1, GPR143, FAM101B, ANKRD5, SPINT1, PPP2R2B, SLC1A6, SLC16A10, CLDN9, KSR2, ZNF649, ICOSLG, GPR113, PPP1R16B, GYLTL1B, DOCK9, ZNF165, TC2N, TUBB4, PRKAR1B, IFI30, GRB7, ZNF595, L1TD1, LHFPL4, RNF144B, DENND1C, REEP6, MAP7, PRR5-ARHGAP8, CDH3, CDCP1, EPCAM, C3, LOC100130899, SCNN1A, ARHGAP8, AGPAT9, SGK3, GLB1L3, CDH1, LAMA3, LEFTY1, ELMO3, PLA2G16, PIM2, ARHGEF5, IRF6, GLS2, PALM3, SLC37A1, FAM19A4, JAZF1, C6orf132, LOC728377, SNAI3, SMPDL3B, FAM46B, CYP2S1, COL21A1, RHOV, PROCR, EPS8L2, PPP1R1B, CRB3, SH2D3A, SNCB, STC2, ZDHHC23, C1orf172, KCNH5, LOC339524, AASS, NPW, P2RX2, DHRS3, LAD1, PPAP2C, MAL2, SPP1, SLC27A6, USP43, LOC285484, FBXO2, EREG, HSPA2, RAB19, VSTM2B, AGMAT, KLK1, SLC39A4, TMEM125, TSTD1, LOC157627, RASGRP4, BSPRY, ANKRD24, SLC19A3, GFRA3, PYY, ESRG, FOXD3, GPC4, NOS1, C1orf116, KCNK6, A2ML1, MATK, TRPM6, FERMT1, REPS2, TDGF1, LEFTY2, HEPHL1, NCCRP1, SH3GL2, C1orf88, FGF4, ACAN, GABRD, FAM83F, ZNF296, ITGB1BP3, TERF1, ACP5, CAT, HERC5, NIPAL1, MST1P9, SYT2, STAC2, PNPLA5, PRSS22, KCNK15, ESRP1, LOC643719, TDGF1P3, PCP4L1, ACE, SLC2A14, CHST8, TRIB3, ICA1, C1orf210, C16orf11, GPR160, CLDN7, BEND4, EHF, CTAGE4, TRIM58, TNFRSF8, CCNI2, ST14, ZNF860, ECHDC2, MMP3, MACC1, SFRP5, LOC100506428, LPAR3, RIMS4, CBR3, OVOL1, SLC30A3, BHMT2, HEY2, BCAN, MCOLN2, SLC4A11, VAV1, BHMT, INHBE, KLRG2, ZNF850, CHAC1, ZDHHC22, EPO, TNNC2, ZMYND15, CA4, CHD5, COBL, ST8SIA5, C20orf118, GPR172B, RTBDN, ZNF513, CTAGE15P, CBR1, MMP24, LOC100133286, MARVELD3, PTPRN, ZNF876P, CCDC64B, GPR64, BBS9, ESRP2, RBP7, AIM1, UTF1, NAPRT1, FBXL21, SAMHD1, CABP1, TMEM151A, CR1L, HESX1, C2orf65, HES2, EGFL6, ILDR1, CTSF, RPL39L, HMX1, ZNF493, TFCP2L1, CNTN1, PCDHB17, PKP3, LOC730102, CXCL16, MYH2, LOC100288748, DNMT3B, CCNA1, CR2, NRN1L, FA2H, TULP2, PROKR2, C1orf130, ANKRD34B, KLK13, C17orf107, HRASLS5, AP1M2, EVC2, SOX15, ADAD2, LYPD5, LOC647946, LOC284408, TMEM215, MFSD6L, LOC100631378, PCDHB15, DPPA2, TRDN, ZNF354C, SLFN12, SCIN, LOC84856, NLRP7, WIF1, MYOZ1, CSF3, NLRP2, ZNF441, SCNN1G, C8orf47, HRH3, ZNF680, ALPK3, ZNF506, ZNF471, GABRG1, MGMT, FLJ34208, ZNF799, ZNF585B, ERAS, ZNF440, ZNF443, ZNF229, ZNF528, ZNF454, CLEC4GP1, SCNN1B, ZNF630, ZFP28, AGBL2, ZNF578, ZNF662, NR1I2, NNAT, CLEC4G, RAMP3, PCDHB5, TCL1A, ZNF682, PIWIL2, LOC100128252, NAP1L6, KLHL34, LOC440910, ZNF433, ZNF135, ZNF823, ZNF829, EPHX3, ZNF667, ZNF90, DPPA3, ZNF563, ZNF439, ZNF44, ZNF572, ZNF442, ZNF69, ZNF502, ZNF429, LOC644554, RBM46, ZNF844, ZNF763, ZNF737, ZNF700, MYH14, DPPA5, ZNF732, CST6, ZNF253, NUDT16P1, GPR114, TMEM30B, ZNF826P, ZNF835, ZNF736, ZNF486, ZNF518A, ZNF626, ZSCAN1, LOC399815, MARVELD2, ZNF560, LY75, ZNF788, MT1H, FOXI2, PEG3, ZNF492, ZNF93, CYP4F22, ZNF98, DCAF12L1, ZNF257, LOC441666, LOC400680, LOC400655, ZNF208, ZFP42, ZNF878, NLRP4, ZNF99.