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. 2014 Oct 18;4:17–21. doi: 10.1016/j.gdata.2014.09.012

Fig. 2.

Fig. 2

Quality control for ChIP-seq raw data and alignment file. (A) Graph representing the per base quality using the Phred score. Pie chart obtained with SAMstat describing the distribution of the sequence alignment quality score before (B) or after (C) filtering. (D) Peak model produce by MACS. (E) Venn diagram representing the overlap of CTCF binding sites between biological replicates.