Table 1.
Library | # Aligned reads (tophat2) | # Reads | % Reads aligned | # Reads assigned (htseq-count) | % Reads assigned |
---|---|---|---|---|---|
0 h #1 | 12′212′116 | 12′569′461 | 97.2 | 10′132′961 | 83.0 |
0 h #2 | 7′635′001 | 7′909′304 | 96.5 | 6′161′473 | 80.7 |
0 h #3 | 7′021′389 | 7′269′544 | 96.6 | 5′753′279 | 81.9 |
3 h #1 | 10′122′474 | 10′503′420 | 96.4 | 8′377′551 | 82.8 |
3 h #2 | 5′941′461 | 6′245′837 | 95.1 | 4′891′124 | 82.3 |
3 h #3 | 10′431′708 | 10′793′766 | 96.6 | 8′497′623 | 81.5 |
6 h #1 | 7′036′437 | 7′304′692 | 96.3 | 5′590′755 | 79.5 |
6 h #2 | 6′935′146 | 7′190′738 | 96.4 | 5′519′191 | 79.6 |
6 h #3 | 7′314′462 | 7′580′633 | 96.5 | 5′845′352 | 79.9 |
9 h #1 | 9′719′183 | 10′033′596 | 96.9 | 7′917′493 | 81.5 |
9 h #2 | 6′525′440 | 6′756′659 | 96.6 | 5′250′375 | 80.5 |
9 h #3 | 7′594′156 | 7′939′613 | 95.6 | 6′124′675 | 80.6 |