Table 1.

Summary statistics of sequencing analysis of the RNA-Seq libraries. The columns show (from left to right): treatment time and replicate number; number of aligned reads; total number of reads after quality filtering; percentage of aligned reads; number of reads assigned uniquely by htseq-count; and percentage of assigned reads out of the aligned ones.

Library	# Aligned reads (tophat2)	# Reads	% Reads aligned	# Reads assigned (htseq-count)	% Reads assigned
0 h #1	12′212′116	12′569′461	97.2	10′132′961	83.0
0 h #2	7′635′001	7′909′304	96.5	6′161′473	80.7
0 h #3	7′021′389	7′269′544	96.6	5′753′279	81.9
3 h #1	10′122′474	10′503′420	96.4	8′377′551	82.8
3 h #2	5′941′461	6′245′837	95.1	4′891′124	82.3
3 h #3	10′431′708	10′793′766	96.6	8′497′623	81.5
6 h #1	7′036′437	7′304′692	96.3	5′590′755	79.5
6 h #2	6′935′146	7′190′738	96.4	5′519′191	79.6
6 h #3	7′314′462	7′580′633	96.5	5′845′352	79.9
9 h #1	9′719′183	10′033′596	96.9	7′917′493	81.5
9 h #2	6′525′440	6′756′659	96.6	5′250′375	80.5
9 h #3	7′594′156	7′939′613	95.6	6′124′675	80.6