Table 3.
A. phagocytophilum genomes currently available in public databases.
| Strain/variant | Host | Geographical area | Size (Mb) | Number of genes* | Level of assembly | References |
|---|---|---|---|---|---|---|
| HZ | Human (Homo sapiens) | USA, New York state | 1.47 | 1411 | Close genome | Dunning Hotopp et al., 2006 |
| HZ2 | Human (Homo sapiens) | USA, New York state | 1.48 | 1141 | Close genome | Barbet et al., 2013 |
| ApNYW | Human (Homo sapiens) | USA, New York state | 1.5 | 1635 | 16 scaffolds | National Center for Biotechnology Information, 2015 |
| ApWI1 | Human (Homo sapiens) | USA, Wisconsin | 1.5 | 1589 | 1 scaffold | National Center for Biotechnology Information, 2015 |
| HGE1 | Human (Homo sapiens) | USA, Minnesota | 1.47 | 1188 | 2 scaffolds | Barbet et al., 2013 |
| HGE2 | Human (Homo sapiens) | USA, Minnesota | 1.48 | 1548 | 1 scaffold | National Center for Biotechnology Information, 2015 |
| NCH-1 | Human (Homo sapiens) | USA, Nantucket | 1.5 | 1646 | 15 scaffolds | National Center for Biotechnology Information, 2015 |
| Webster | Human (Homo sapiens) | USA, Wisconsin | 1.48 | 1570 | 1 scaffold | National Center for Biotechnology Information, 2015 |
| Dog2 | Dog (Canis lupus familiaris) | USA, Minnesota | 1.47 | 1148 | 1 scaffold | Barbet et al., 2013 |
| ApMUC09 | Dog (Canis lupus familiaris) | Europe, Netherlands | 1.52 | 1675 | 1 scaffold | National Center for Biotechnology Information, 2015 |
| ApNP | Dog (Canis lupus familiaris) | Europe, Austria | 1.52 | 1827 | 1 scaffold | National Center for Biotechnology Information, 2015 |
| Annie | Horse (Equus caballus) | USA, Minnesota | 1.52 | 1642 | 15 scaffolds | National Center for Biotechnology Information, 2015 |
| MRK | Horse (Equus caballus) | USA, California | 1.48 | 1155 | 9 scaffolds | Barbet et al., 2013 |
| BOV_10-179 | Cow (Bos taurus) | Europe, France | 1.37 | 1041 | 169 scaffolds | Dugat et al., 2014b |
| Norway Variant 2 | Sheep (Ovis aries) | Europe, Norway | 1.52 | 1174 | 23 scaffolds | Barbet et al., 2013 |
| JM | Zapus hudsonius | USA, Minnesota | 1.48 | 1140 | Close genome | Barbet et al., 2013 |
| CR1007 | Tamias striatus | USA, Minnesota | 1.5 | 1554 | 4 scaffolds | National Center for Biotechnology Information, 2015 |
| CRT38 | Ixodes scapularis | USA, Minnesota | 1.51 | 1203 | 2 scaffolds | Barbet et al., 2013 |
| CRT35 | Ixodes scapularis | USA, Minnesota | 1.45 | 1148 | 25 scaffolds | Barbet et al., 2013 |
| CRT53-1 | Ixodes scapularis | USA, Minnesota | 1.57 | 1655 | 45 scaffolds | National Center for Biotechnology Information, 2015 |
*
Genes include complete CDS, rRNA, tRNA and pseudogenes.