Table 2. Statistics for filtering and mapping reads.
| Sample name | ALUI_eggs | ALHI_eggs | PLUI_eggs | PLHI_eggs |
|---|---|---|---|---|
| Raw reads | 45642086 | 45367550 | 48829078 | 53267444 |
| Q20 | 96.73 | 96.65 | 96.96 | 96.95 |
| Q30 | 90.73 | 90.48 | 91.07 | 91.08 |
| GC Content(%) | 44.27 | 44.94 | 43.72 | 43.73 |
| Clean reads | 43667962 | 43490662 | 47090892 | 50396006 |
| Total mapped | 34595613 (79.22%) | 34905084 (80.26%) | 37608858 (79.86%) | 39878143 (79.13%) |
| Multiple mapped | 1228265 (2.81%) | 1008424 (2.32%) | 1034802 (2.2%) | 809244 (1.61%) |
| Uniquely mapped | 33367348 (76.41%) | 33896660 (77.94%) | 36574056 (77.67%) | 39068899 (77.52%) |
| Non-splice reads | 24256073 (55.55%) | 23843258 (54.82%) | 26266881 (55.78%) | 27936302 (55.43%) |
| Splice reads | 9111275 (20.86%) | 10053402 (23.12%) | 10307175 (21.89%) | 11132597 (22.09%) |