Extended Data Table 9. Genomes merged with the Oase 1 data.
| Sample ID | Human | Data type | Mean | UDG-treated |
|---|---|---|---|---|
| Oasel | Modern | Low coverage | Capture | Mix of library types |
|
| ||||
| Vindija | Archaic | Low coverage | 1.3 | No |
| Mezmaiskaya | Archaic | Low coverage | 0.5 | Yes |
| Altai | Archaic | High coverage | 52 | Yes |
| Denisova | Archaic | High coverage | 31 | Yes |
| Kostenki14 | Modern | Low coverage | 2.4 | Mix of library types |
| MA1 | Modern | Low coverage | 1 | No |
| LaBrana | Modern | Low coverage | 3.4 | No |
| Loschbour | Modern | High coverage | 22 | Yes |
| Stuttgart | Modern | High coverage | 19 | Yes |
| Ust’-Ishim | Modern | High coverage | 42 | Yes |
|
| ||||
| DinkaA | Modern | High coverage | 28 | .. |
| FrenchA | Modern | High coverage | 27 | .. |
| PapuanA | Modern | High coverage | 26 | .. |
| SardinianA | Modern | High coverage | 25 | .. |
| HanA | Modern | High coverage | 28 | .. |
| YorubaA | Modern | High coverage | 32 | .. |
| KaritianaA | Modern | High coverage | 26 | .. |
| SanA | Modern | High coverage | 33 | .. |
| MandenkaA | Modern | High coverage | 25 | .. |
| DaiA | Modern | High coverage | 28 | .. |
| MbutiA | Modern | High coverage | 24 | .. |
|
| ||||
| DaiB | Modern | High coverage | 37 | .. |
| FrenchB | Modern | High coverage | 42 | .. |
| HanB | Modern | High coverage | 35 | .. |
| MandenkaB | Modern | High coverage | 37 | .. |
| MbutiB | Modern | High coverage | 37 | .. |
| PapuanB | Modern | High coverage | 42 | .. |
| SanB | Modern | High coverage | 38 | .. |
| SardinianB | Modern | High coverage | 38 | .. |
| YorubaB | Modern | High coverage | 39 | .. |
| KaritianaB | Modern | High coverage | 35 | .. |
| MixeB | Modern | High coverage | 42 | .. |
| AustralianB1 | Modern | High coverage | 42 | .. |
| AustralianB2 | Modern | High coverage | 37 | .. |
| DinkaB | Modern | High coverage | 35 | .. |
*
Note: For the 25 present-day humans, samples ending with a subscript “A” are from “Panel A” of 11 individuals and samples ending with a subscript “B” are from “Panel B” of 14 individuals. Unless otherwise specified, in the analyses in this study we used Panel B individuals to represent specified present-day human populations.