. Author manuscript; available in PMC: 2016 Feb 13.

Published in final edited form as: Nature. 2015 Jun 22;524(7564):216–219. doi: 10.1038/nature14558

Extended Data Table 4. Estimated fraction of the Oase 1 genome that derives from Neanderthals.

Estimates are as in Table 1 but restrict to transversions. Modern human samples are from Panel B.

Sample

\frac{f_{4} (Denisova, Altai; Mbuti, X)}{f_{4} (Denisova, Altai; Mbuti, Mezmaiskaya)}

1 - \frac{f_{4} (Mbuti, Chimp; X, Denisova)}{f_{4} (Mbuti, Chimp; Dinka, Denisova)}

\frac{f_{4} (X, Mbuti; Denisova, Chimp)}{f_{4} (Altai, Mbuti; Denisova, Chimp)}

Prop.

S.E.

90% CI

Prop.

S.E.

90% CI

Prop.

S.E.

90% CI

Oase 1

11.3%

2.8%

6.7%–16%

10.9%

1.6%

8.3%–13.6%

8.4%

2.7%

4.0%–12.9%

Ust'-Ishim

2.9%

1.2%

1.0%–4.9%

6.0%

0.8%

4.7%–7.4%

4.2%

1.5%

1.8%–6.6%

Kostenki 14

3.0%

1.4%

0.7%–5.3%

3.0%

0.9%

1.6%–4.5%

6.2%

1.6%

3.6%–8.7%

MA1

1.5%

0.0%–4.0%

3.6%

1.0%

1.9%–5.2%

5.5%

1.6%

2.8%–8.2%

Loschbour

1.1%

1.2%

0.0%–3.1%

4.8%

0.9%

3.3%–6.2%

3.6%

1.5%

1.2%–6.1%

LaBrana

3.7%

1.3%

1.4%–5.9%

2.4%

0.9%

0.9%–3.8%

4.8%

1.5%

2.4%–7.2%

Stuttgart

2.8%

1.2%

0.8%–4.8%

3.4%

0.9%

2.0%–4.9%

3.8%

1.5%

1.4%–6.2%

Han

1.0%

1.3%

0.0%–3.1%

2.8%

0.9%

1.3%–4.2%

3.6%

1.5%

1.2%–6.1%

Dai

2.1%

1.2%

0.2%–4.0%

1.3%

0.9%

0.0%–2.8%

3.8%

1.5%

1.4%–6.2%

French

1.6%

1.2%

0.0%–3.5%

3.3%

0.9%

1.9%–4.7%

2.7%

1.5%

0.3%–5.2%

Sardinian

2.7%

1.2%

0.8%–4.7%

2.3%

0.9%

0.8%–3.7%

3.7%

1.4%

1.3%–6.1%