Table 3.
Mutation | Damaginga
SIFT Score |
ChAT activity affected |
Location on Sec. structure |
Mutation probable structural effect |
---|---|---|---|---|
p.Val136Met | yes 0 |
↓ Lowest enzyme expression |
Coil 1 before α-helix 1 binding domain |
Possible energetic interaction with AcCoA |
p.Arg186Trp | yes 0 |
↓↓ kcat, ↓ | α-helix 3 binding domain |
Destabilize enzyme folding |
p.Val194Leu | tolerated 1 |
↑↑kcat, ↑↑
↑ |
Coil 3 before α- helix 4 binding domain |
Alter AcCoA binding site |
p.Arg207His | yes 0 |
↓↓kcat, ↓↓
Low ChAT expression |
Coil 5 between α-helix 4 and β-sheet 1 binding domain |
Modify active site, close to His424 |
p.Pro211Ala | tolerated 0.39 |
↑ kcat, ↑↑ | Coil 5 before β-sheet 1 catalytic domain |
Change active site and choline-binding site |
p.Arg566Cys | tolerated 1 |
↓ kcat, ↑
|
β-sheet 12 binding domain |
Disrupt H-bond with His424 at active site |
p.Ser694Cys | Yes 0 |
↓ kcat, ↑↑ | β-sheet 16 binding domain |
Disrupt H-bond with Tyr670 involved in choline binding |
↑, increase in the Km value; ↑↑, large increase in the Km value; ↓, decrease in the Km value; ↓↓, large decrease in the Km value.
SIFT score predicts whether an amino acid substitution affects protein function based on sequence homology and the physical properties of amino acids.