Table 1.
Primers used in the present study, targeting the hexon and fiber regions.
| Primer ID | Sequence (5′-3′) | Amplicon size (bp) | Primer position (5′-3′)∗ | Region | Species |
|---|---|---|---|---|---|
| 1551 | TICTTTGACATICGIGGIGTICTIGA | 764–896 | 19135–19160 (J01917) | Hexon | All |
| 1553 | CTGTCIACIGCCTGRTTCCACA | 20051–20030 (J01917) | |||
| 1554 | GGYCCYAGYTTYAARCCCTAYTC | 688–821 | 19165–19187 (J01917) | ||
| 1555 | GGTTCTGTCICCCAGAGARTCIAG | 20016–19993 (J01917) | |||
|
| |||||
| 1560 | TGGAACTTAACAACTGATAT | 605 | 30400–30419 (NC_001460) | Fiber | A |
| 1561 | ACTTTCATTGTHATRGGT | 31004–30987 (NC_001460) | |||
| 1545 | ATTCCATCGAGTGCACCTACAC | 691 | 30539–30560 (AY598970) | B | |
| 1546 | GGGTTGACTCCTGTCCATAAGG | 31229–31208 (AY598970) | |||
| 1708 | TTGTTGCAGATGAAACGCGC | 433 | 31021–31040 (J01917) | C | |
| 1709 | GTTTGGAGTCTTGCACGGT | 31453–31435 (J01917) | |||
| 1490 | AACTGTGCCTTGGAATCATC | 499 | 29642–29661 (L19443) | F | |
| 1491 | TTAAGGTTAAAGCCCCGTTT | 30140–30121 (L19443) | |||
∗The primer positions are based on the GenBank sequence accession numbers indicated in parentheses.