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. Author manuscript; available in PMC: 2015 Aug 18.
Published in final edited form as: Bull Math Biol. 2013 Oct 26;76(4):819–853. doi: 10.1007/s11538-013-9910-x

Table 7.

Biochemical parameters in Sect. 4

D3 diffusion coefficient in 3D space
D1 diffusion coefficient on the 1D polymer
ka,micro coefficient for association of A3 to P in the microscopic model
kd,micro coefficient for dissociation of A1 from P in the microscopic model
ka,meso coefficient for association of A3 to P in the mesoscopic model
kd,meso coefficient for dissociation of A1 from P in the mesoscopic model
kb,micro coefficient for binding of A1 to B in the microscopic model
ku,micro coefficient for unbinding of A1 from B in the microscopic model
kb,meso coefficient for binding of A1 to B in the mesoscopic model
ku,meso coefficient for unbinding of A1 from B in the mesoscopic model