Table 5.
Detected SNPs with significant genetic effects.
| Trait | QTS | Chr. | Allele | Effect | Predict | −log10(P) | h 2 (%) | Total |
|---|---|---|---|---|---|---|---|---|
| AC | rs1610021 | 6 | G/A | a | −2.20 | 26.94 | 16.89 | 68.67 |
| rs1644460 | 6 | C/T | a | −3.85 | 79.97 | 51.78 | ||
|
| ||||||||
| GC | rs1644460 | 6 | C/T | a | 15.02 | 61.32 | 52.15 | 58.58 |
| ae 1 | −3.48 | 2.52 | 2.80 | |||||
| ae 2 | 3.47 | 2.11 | 2.80 | |||||
| rs919289 | 7 | C/G | a | −3.96 | 4.97 | 3.63 | ||
|
| ||||||||
| GT | rs1289107 | 6 | G/A | a | −0.54 | 25.06 | 24.00 | 52.01 |
| ae 1 | 0.25 | 3.49 | 5.00 | |||||
| ae 2 | −0.25 | 2.99 | 5.00 | |||||
| rs1644460 | 6 | C/T | a | −0.35 | 10.73 | 9.81 | ||
| ae 1 | −0.30 | 5.01 | 7.40 | |||||
| ae 2 | 0.30 | 4.05 | 7.40 | |||||
| rs1289107 and rs1644460 | 6 | G/A | aa | 0.21 | 4.33 | 3.60 | ||
| aae 1 | −0.16 | 1.76 | 2.20 | |||||
| 6 | C/T | aae 2 | 0.17 | 1.61 | 2.20 | |||
AC: amylose content; GC: gel consistency; GT: gelatinization temperature; e 1: environment 1; e 2: environment 2; a: additive effect; ae 1 and ae 2: environment-specific additive effect; aae 1 and aae 2: environment-specific additive-additive epistasis effect. −log10(P) = −log10(P-value). h 2 (%) = heritability (%) due to the genetic component effect.