Proteins
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PRC2 |
The polycomb repressive complex 2 (PRC2) is known to be recruited early on the inactive X (Xi) during differentiation of embryonic stem cells (ESCs) and embryonic development and catalyzes methylation of histone H3 at K27 on chromatin |
[40, 80, 81] |
PRC1 |
The activity of polycomb repressive complex 1 (PRC1) on chromatin reinforces gene silencing by ubiquitylation of histone H2A at K119 and chromatin compaction. The order of recruitment of PRC2 and PRC1 to the Xi is still a matter of debate |
[82, 83] |
Saf-A (HnrnpU) |
The Saf-A (HnrnpU) factor directly binds to Xist and mediates its interaction with chromatin through direct interaction with SARS/MARS elements |
[21, 23, 44, 56, 58] |
SHARP (Spen) |
SHARP (Spen) directly binds to Xist and mediates the functional interaction between Xist and the NCoR complex |
[21, 23, 44] |
CTCF |
The CCCTC-binding factor (CTCF) might work as a genomic insulator. In the context of X chromosome inactivation (XCI), it might serve as a barrier to Xist-induced chromatin reorganization |
[21, 67] |
SATB1 |
The special AT-rich sequence-binding protein-1 (SATB1) cellular regulator of higher chromatin organization has a role in the initiation of XCI. However, its precise role in XCI is not clear |
[59, 84] |
YY1 |
Yin-Yang 1 (YY1) is a bivalent protein with DNA-binding and RNA-binding motifs. It might have a role in tethering Xist to chromatin (spreading in cis) as well as a role in the regulation of Xist |
[44, 60, 85] |
SmchD1 |
The protein structural maintenance of chromosome hinge domain 1 (SmchD1) has a role in maintaining a correct pattern of DNA methylation on the Xi during the maintenance phase of XCI |
[21, 86] |
WTAP |
Wilms’ tumor-associated protein (WTAP) is a splicing factor and interactor with Xist. It is involved in regulating RNA methylation. It might have a role in the post-transcriptional modification of Xist |
[21, 23, 44] |
LBR |
The lamin B receptor (LBR) was recently identified as an Xist-binding protein. It is known to localize with the nuclear lamina and to interact with repressive complexes as well as with lamin B |
[21, 23] |
Rbm15 |
Rbm15 belongs to the SPEN family of transcriptional repressors and directly binds to Xist RNA |
[23] |
hnRNPK |
Heterogeneous nuclear ribonucleoprotein K (hnRNPK) is an RNA-binding protein that interacts with Xist and plays a role in the Xist-mediated recruitment of repressive chromatin marks |
[21, 44] |
Oct4, Sox2, Rex1, Nanog, PRDM14, Klf4 |
Pluripotency factors and epigenetic regulators that have been shown to control XCI through the regulation of Xist and Tsix |
[2, 74, 87, 88] |
Rnf12 |
The Rnf12 protein seems to regulate the expression of Xist through degradation of Rex1 |
[75] |
Atrx |
The protein alpha thalassemia/mental retardation syndrome X-linked (Atrx) is involved in the recruitment of PRC2 on the inactive X chromosome |
[21, 89] |
ncRNAs
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Xist/Tsix |
Xist is the master regulator of XCI, and Tsix is its major antagonist. Regulation of the levels of Xist and Tsix regulates the initiation of XCI |
[2] |
Jpx |
The Jpx ncRNA seems to act as an activator of Xist |
[2] |
Ftx |
The Ftx ncRNA seems to be an Xist activator |
[2] |
Genomic elements
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LINEs |
The LINEs class of genomic repeats colocalize with inactive genes in the Xi territory and might have a role in the establishment and maintenance of XCI |
[43, 90, 91] |
SARS/MARS |
Facultative scaffold/matrix attachment regions enriched in open chromatin and gene bodies where Xist accumulates |
[7, 66] |