Table 2.

Animal-specific imputation accuracy (r_corrected) and the standard errors on GGA1 for different MAF classes in G0, G1 and G2 validation populations (48K to 60K scenario)

Validation population
G01
MAF2 class	Ref22	Ref62
0.008-0.1	0.68 (0.005)a	0.80 (0.006)
0.1-0.2	0.82 (0.004)	0.89 (0.004)
0.2-0.3	0.86 (0.003)	0.91 (0.003)
0.3-0.4	0.88 (0.003)	0.93 (0.003)
0.4-0.5	0.86 (0.003)	0.91 (0.003)
G13
MAF class	Ref22	Ref62
0.008-0.1	0.60 (0.005)	0.73 (0.005)
0.1-0.2	0.80 (0.004)	0.86 (0.003)
0.2-0.3	0.84 (0.002)	0.89 (0.002)
0.3-0.4	0.86 (0.002)	0.91 (0.002)
0.4-0.5	0.81 (0.003)	0.87 (0.002)
G24
MAF class	Ref22	Ref62
0.008-0.1	0.72 (0.007)	0.78 (0.007)
0.1-0.2	0.85 (0.005)	0.88 (0.005)
0.2-0.3	0.87 (0.005)	0.87 (0.006)
0.3-0.4	0.89 (0.004)	0.92 (0.005)
0.4-0.5	0.85 (0.005)	0.90 (0.005)

¹ First generation of genomic selection experiment

² Minor allele frequency

³ Offspring of G0

⁴ Offspring of G1

^a The values in parentheses are standard errors