Table 7.

Correlation between allelic R² measure from Beagle and true imputation reliability on GGA1 for different MAF classes and different reference sizes in G0, G1 and G2 (48K to 60K scenario)

	Ref22			Ref62
MAF1class	G02	G13	G24	G0	G1	G2
0.008–0.1	0.70	0.60	0.45	0.67	0.71	0.51
0.1–0.2	0.67	0.73	0.52	0.72	0.72	0.63
0.2–0.3	0.75	0.72	0.64	0.74	0.73	0.71
0.3–0.4	0.64	0.69	0.60	0.79	0.76	0.68
0.4–0.5	0.74	0.72	0.71	0.85	0.81	0.82

¹ Minor allele frequency

² First generation of genomic selection experiment

³ Offspring of G0

⁴ Offspring of G1