Table 2. RNAseq analysis from various explants of neem.

Tissue	No. of readsa	No of genes/RPKM > 1	No of genes/RPKM > 5	No of genes/RPKM > 10
Mature leaf	5,401,910	19,308	14,807	11,763
Flower and bud	22,654,982	21,927	16,716	13,632
Fruit coat and pulp	55,627,021	21,537	16,693	13,888
Developing endosperm	31,340,522	19,480	15,262	12,614
Mature fruit	23,321,657	17,366	12,407	9,741
Seedling root	4,427,659	20,798	17,015	14,312
Seedling shoot	5,894,621	20,199	15,926	13,018
Drought root	7,255,199	21,371	17,015	14,236
Drought shoot	22,600,138	20,763	16,077	13,431
Albino root	1,267,4871	21,710	17,201	1,4273
Albino shoot	23,115,676	21,226	16,874	14,066
Leaf callus	2,150,935	18,615	15,356	12,727

Notes.

^aread quality = q20 and read length = 100 nts.