Table 2. Algorithm implementations.

Algorithm	Weka class
Decision Tree	weka.classifiers.trees.J48
Random Forest	weka.classifiers.trees.RandomForest
SVM (linear)	own LibSVM wrapper
SVM (RBF)	own LibSVM wrapper
kNN	weka.classifiers.lazy.IBk
Multilayer Perceptron	weka.classifiers.functions (modified 1 )
LVQ	weka.classifiers.neural.lvq.MultipassLvq 2

¹: Added the option to use $\sqrt{\#SNPs}$ hidden nodes instead of fixed number

²: Plug-in from http://wekaclassalgos.sourceforge.net/