TABLE 1.
Clinical isolates, type or reference strains, and sequences included in this study
| Species | Strain/isolate no.a | Origin (country)b | GenBank nucleotide accession no. for: |
|||
|---|---|---|---|---|---|---|
| ITS | LSU | EF-1α | Act | |||
| Cercospora beticola | CBS 116456T | Beta vulgaris (Italy) | NR121315 | GU214404 | AY840494 | AY840458 |
| Cercospora olivascens | CBS 253.67T | Unknown | NR111773 | |||
| Cladosporium allicinum | CBS 121624T | Hordeum vulgare (Belgium) | EF679350 | EF679425 | EF679502 | |
| UTHSC DI-13-173 | Human, lung (USA) | LN834353 | LN834449 | LN834537 | ||
| UTHSC DI-13-176 | Human, skin (USA) | LN834354 | LN834450 | LN834538 | ||
| UTHSC DI-13-266 | Canine, skin (USA) | LN834355 | LN834451 | LN834539 | ||
| Cladosporium angustisporum | CBS 125983T | Alloxylon wickhamii (Australia) | HM147995 | HM148236 | HM148482 | |
| UTHSC DI-13-240 | Human, toe nail (USA) | LN834356 | LN834452 | LN834540 | ||
| Cladosporium asperulatum | CBS 126339 | Eucalyptus leaf litter (India) | HM147997 | HM148238 | HM148484 | |
| CBS 126340T | Protea susannae (Portugal) | HM147998 | HM148239 | HM148485 | ||
| UTHSC DI-13-216 | Feline, nasal (USA) | LN834357 | LN834453 | LN834541 | ||
| Cladosporium cladosporioides | CBS 101367 | Soil (Brasil) | HM148002 | HM148243 | HM148489 | |
| CBS 112388T | Indoor air (Germany) | HM148003 | HM148244 | HM148490 | ||
| UTHSC DI-13-204 | Human, abdomen (USA) | LN834358 | LN834454 | LN834542 | ||
| UTHSC DI-13-209 | Human, pleural (USA) | LN834359 | LN834455 | LN834543 | ||
| UTHSC DI-13-215 | Human, sputum (USA) | LN834360 | LN834456 | LN834544 | ||
| Cladosporium colocasiae | CBS 386.64T | Colocasia antiquorum (Taiwan) | HM148067 | HM148310 | HM148555 | |
| CBS 119542 | Colocasia esculanta (Taiwan) | HM148066 | HM148309 | HM148554 | ||
| Cladosporium cucumerinum | CBS 171.52T | Fruit of Cucumis sativus (Netherlands) | HM148072 | HM148316 | HM148561 | |
| CBS 173.54 | Fruit of Cucumis sativus (Netherlands) | HM148074 | HM148318 | HM148563 | ||
| Cladosporium flabelliforme | CBS 126345T | Melaleuca cajuputi (Australia) | HM148092 | HM148336 | HM148581 | |
| UTHSC DI-13-267 | Human, sputum (USA) | LN834361 | LN834457 | LN834545 | ||
| Cladosporium funiculosum | CBS 122128 | Unknown | HM148093 | HM148337 | HM148582 | |
| CBS 122129T | Leaf of Vigna umbellata (Japan) | HM148094 | HM148338 | HM148583 | ||
| UTHSC DI-13-175 | Human, BAL fluid (USA) | LN834362 | LN834458 | LN834546 | ||
| UTHSC DI-13-223 | Human, BAL fluid (USA) | LN834363 | LN834459 | LN834547 | ||
| UTHSC DI-13-242 | Human, nasal wash (USA) | LN834364 | LN834460 | LN834548 | ||
| Cladosporium halotolerans | CBS 119416T | Hypersaline water (Namibia) | DQ780364 | JN906989 | EF101397 | |
| FMR 13493 | Human, unknown (Spain) | LN834365 | LN834461 | LN834549 | ||
| UTHSC DI-13-164 | Human, bone marrow (USA) | LN834366 | LN834462 | LN834550 | ||
| UTHSC DI-13-182 | Marine mammal, dermis (USA) | LN834367 | LN834463 | LN834551 | ||
| UTHSC DI-13-183 | Human, bronchus (USA) | LN834368 | LN834464 | LN834552 | ||
| UTHSC DI-13-206 | Human, BAL fluid (USA) | LN834369 | LN834465 | LN834553 | ||
| UTHSC DI-13-213 | Human, lymph node (USA) | LN834370 | LN834466 | LN834554 | ||
| UTHSC DI-13-221 | Human, bone marrow (USA) | LN834371 | LN834467 | LN834555 | ||
| UTHSC DI-13-231 | Catheter tip (USA) | LN834372 | LN834468 | LN834556 | ||
| UTHSC DI-13-249 | Human, nasal (USA) | LN834373 | LN834469 | LN834557 | ||
| UTHSC DI-13-250 | Human, scalp (USA) | LN834374 | LN834470 | LN834558 | ||
| UTHSC DI-13-252 | Human, toe nail (USA) | LN834375 | LN834471 | LN834559 | ||
| UTHSC DI-13-259 | Human, BAL fluid (USA) | LN834376 | LN834472 | LN834560 | ||
| UTHSC DI-13-263 | Human, BAL fluid (USA) | LN834377 | LN834473 | LN834561 | ||
| Cladosporium herbaroides | CBS 121626T | Hypersaline water (Israel) | EF679357 | EF679432 | EF679509 | |
| Cladosporium herbarum | CBS 121621T | Hordeum vulgare (Netherlands) | EF679363 | EF679440 | EF679516 | |
| UTHSC DI-13-220 | Human, BAL fluid (USA) | LN834378 | LN834474 | LN834562 | ||
| Cladosporium iranicum | CBS 126346T | Leaf of Citrus sinensis (Iran) | HM148110 | HM148354 | HM148599 | |
| Cladosporium iridis | CBS 138.40T | Leaf of Iris sp. (Netherlands) | EF679370 | EF679447 | EF679523 | |
| Cladosporium macrocarpum | CBS 121623T | Spinacia oleracea (USA) | EF679375 | EF679453 | EF679529 | |
| UTHSC DI-13-191 | Human, face (USA) | LN834379 | LN834475 | LN834563 | ||
| Cladosporium oxysporum | CBS 125991 | Soil (China) | HM148118 | HM148362 | HM148607 | |
| CBS 126351 | Indoor air (Venezuela) | HM148119 | HM148363 | HM148608 | ||
| Cladosporium perangustum | CBS 125996T | Cussonia sp. (South Africa) | HM148121 | HM148365 | HM148610 | |
| UTHSC DI-13-208 | Canine, BAL fluid (USA) | LN834380 | LN834476 | LN834564 | ||
| Cladosporium pseudocladosporioides | CBS 117153 | Leaf of Paeonia sp. (Germany) | HM148157 | HM148401 | HM148646 | |
| CBS 125993T | Outside air (Netherlands) | HM148158 | HM148402 | HM148647 | ||
| UTHSC DI-13-187 | Turtle, unknown (USA) | LN834381 | LN834477 | LN834565 | ||
| UTHSC DI-13-232 | Human, shoulder (USA) | LN834382 | LN834478 | LN834566 | ||
| UTHSC DI-13-233 | Human, BAL fluid (USA) | LN834383 | LN834479 | LN834567 | ||
| UTHSC DI-13-261 | Human, sputum (USA) | LN834384 | LN834480 | LN834568 | ||
| Cladosporium ramotenellum | CBS 121628T | Hypersaline water (Slovenia) | EF679384 | EF679462 | EF679538 | |
| UTHSC DI-13-166 | Human, nasal tissue (USA) | LN834385 | LN834481 | LN834569 | ||
| UTHSC DI-13-222 | Animal, Nasal (USA) | LN834386 | LN834482 | LN834570 | ||
| UTHSC DI-13-224 | Animal, Nasal (USA) | LN834387 | LN834483 | LN834571 | ||
| Cladosporium sinuosum | CBS 121629T | Fuchsia excorticata (New Zealand) | EF679386 | EF679464 | EF679540 | |
| Cladosporium sphaerospermum | CBS 193.54T | Human, nail (Netherlands) | DQ780343 | EU570261 | EU570269 | |
| UTHSC DI-13-184 | Frog, abscess (USA) | LN834388 | LN834484 | LN834572 | ||
| UTHSC DI-13-229 | Human, BAL fluid (USA) | LN834389 | LN834485 | LN834573 | ||
| UTHSC DI-13-237 | Human, BAL fluid (USA) | LN834390 | LN834486 | LN834574 | ||
| Cladosporium subinflatum | CBS 121630T | Hypersaline water (Slovenia) | EF679389 | EF679467 | EF679543 | |
| UTHSC DI-13-189 | Human, toe nail (USA) | LN834391 | LN834487 | LN834575 | ||
| Cladosporium subtilissimum | CBS 113754T | Grape berry (USA) | EF679397 | EF679475 | EF679551 | |
| Cladosporium subuliforme | CBS 126500T | Chamaedorea metallica (Thailand) | HM148196 | HM148441 | HM148686 | |
| UTHSC DI-13-171 | Human, CSF (USA) | LN834392 | LN834488 | LN834576 | ||
| UTHSC DI-13-180 | Human, BAL fluid (USA) | LN834393 | LN834489 | LN834577 | ||
| UTHSC DI-13-214 | Human, BAL fluid (USA) | LN834394 | LN834490 | LN834578 | ||
| UTHSC DI-13-254 | Human, BAL fluid (USA) | LN834395 | LN834491 | LN834579 | ||
| UTHSC DI-13-255 | Human, toe nail (USA) | LN834396 | LN834492 | LN834580 | ||
| Cladosporium tenuissimum | CBS 125995T | Fruits of Lagerstroemia sp. (USA) | HM148197 | HM148442 | HM148687 | |
| UTHSC DI-13-174 | Marine mammal, lung (USA) | LN834397 | LN834493 | LN834581 | ||
| UTHSC DI-13-177 | Human, skin (USA) | LN834398 | LN834494 | LN834582 | ||
| UTHSC DI-13-188 | Human, BAL fluid (USA) | LN834399 | LN834495 | LN834583 | ||
| UTHSC DI-13-205 | Human, BAL fluid (USA) | LN834400 | LN834496 | LN834584 | ||
| UTHSC DI-13-236 | Human, nasal (USA) | LN834401 | LN834497 | LN834585 | ||
| UTHSC DI-13-239 | Human, sputum (USA) | LN834402 | LN834498 | LN834586 | ||
| UTHSC DI-13-253 | Human, BAL fluid (USA) | LN834403 | LN834499 | LN834587 | ||
| UTHSC DI-13-258 | Human, thorancentesis fluid (USA) | LN834404 | LN834500 | LN834588 | ||
| UTHSC DI-13-274 | Human, toe (USA) | LN834405 | LN834501 | LN834589 | ||
| Cladosporium sp. | UTHSC DI-13-165 | Human, arm drainage (USA) | LN834406 | LN834502 | LN834590 | |
| UTHSC DI-13-168 | Human, BAL fluid (USA) | LN834407 | LN834503 | LN834591 | ||
| UTHSC DI-13-169 | Human, BAL fluid (USA) | LN834408 | LN834504 | LN834592 | ||
| UTHSC DI-13-170 | Human, toe nail (USA) | LN834409 | LN834505 | LN834593 | ||
| UTHSC DI-13-178 | Animal, abscess (USA) | LN834410 | LN834506 | LN834594 | ||
| UTHSC DI-13-179 | Human, hand (USA) | LN834411 | LN834507 | LN834595 | ||
| UTHSC DI-13-190 | Human, CSF (USA) | LN834412 | LN834508 | LN834596 | ||
| UTHSC DI-13-207 | Human, CSF (USA) | LN834413 | LN834509 | LN834597 | ||
| UTHSC DI-13-210 | Human, skin (USA) | LN834414 | LN834510 | LN834598 | ||
| UTHSC DI-13-211 | Human, BAL fluid (USA) | LN834415 | LN834511 | LN834599 | ||
| UTHSC DI-13-212 | Human, ethmoid sinus (USA) | LN834416 | LN834512 | LN834600 | ||
| UTHSC DI-13-217 | Human, nasal (USA) | LN834417 | LN834513 | LN834601 | ||
| UTHSC DI-13-218 | Human, BAL fluid (USA) | LN834418 | LN834514 | LN834602 | ||
| UTHSC DI-13-219 | Human, foot (USA) | LN834419 | LN834515 | LN834603 | ||
| UTHSC DI-13-225 | Animal, BAL fluid (USA) | LN834420 | LN834516 | LN834604 | ||
| UTHSC DI-13-226 | Human, BAL fluid (USA) | LN834421 | LN834517 | LN834605 | ||
| UTHSC DI-13-227 | Human, sputum (USA) | LN834422 | LN834518 | LN834606 | ||
| UTHSC DI-13-228 | Human, foot skin (USA) | LN834423 | LN834519 | LN834607 | ||
| UTHSC DI-13-234 | Human, sputum (USA) | LN834424 | LN834520 | LN834608 | ||
| UTHSC DI-13-235 | Human, BAL fluid (USA) | LN834425 | LN834521 | LN834609 | ||
| UTHSC DI-13-238 | Human, leg (USA) | LN834426 | LN834522 | LN834610 | ||
| UTHSC DI-13-241 | Human, foot (USA) | LN834427 | LN834523 | LN834611 | ||
| UTHSC DI-13-244 | Human, BAL fluid (USA) | LN834428 | LN834524 | LN834612 | ||
| UTHSC DI-13-245 | Human, toe (USA) | LN834429 | LN834525 | LN834613 | ||
| UTHSC DI-13-246 | Human, BAL fluid (USA) | LN834430 | LN834526 | LN834614 | ||
| UTHSC DI-13-247 | Human, BAL fluid (USA) | LN834431 | LN834527 | LN834615 | ||
| UTHSC DI-13-251 | Human, BAL fluid (USA) | LN834432 | LN834528 | LN834616 | ||
| UTHSC DI-13-257 | Human, sputum (USA) | LN834433 | LN834529 | LN834617 | ||
| UTHSC DI-13-262 | Dolphin, bronchus (USA) | LN834434 | LN834530 | LN834618 | ||
| UTHSC DI-13-265 | Human, BAL fluid (USA) | LN834435 | LN834531 | LN834619 | ||
| UTHSC DI-13-268 | Human, toe nail (USA) | LN834436 | LN834532 | LN834620 | ||
| UTHSC DI-13-269 | Human, BAL fluid (USA) | LN834437 | LN834533 | LN834621 | ||
| UTHSC DI-13-270 | Human, nail (USA) | LN834438 | LN834534 | LN834622 | ||
| UTHSC DI-13-271 | Human, BAL fluid (USA) | LN834439 | LN834535 | LN834623 | ||
| UTHSC DI-13-273 | Human, toe nails (USA) | LN834440 | LN834536 | LN834624 | ||
| Cladosporium variabile | CBS 121636T | Spinacia oleracea (USA) | EF679402 | EF679480 | EF679556 | |
| Penidiella sp. | UTHSC DI-13-256 | Human, nail (USA) | LN834441 | LN834445 | ||
| Toxicocladosporium banksiae | CBS 128215T | Leaf of Banksia emulata (Australia) | HQ599598 | HQ599599 | ||
| Toxicocladosporium chlamydosporum | CBS 124157T | Leaf of Eucalyptus camaldulensis (Madagascar) | FJ790283 | FJ790301 | ||
| Toxicocladosporium ficiniae | CBS 136406T | Leaf of Ficinia sp. (South Africa) | KF777190 | KF777241 | ||
| Toxicocladosporium irritans | CBS 185.58T | Moldy paint (Suriname) | EU040243 | EU040243 | ||
| UTHSC DI-13-181 | Human, blood (USA) | LN834442 | LN834446 | |||
| UTHSC DI-13-230 | Human, finger nail (USA) | LN834443 | LN834447 | |||
| Toxicocladosporium pini | CBS 138005T | Needles of Pinus sp. (China) | KJ869160 | KJ869217 | ||
| Toxicocladosporium posoqueriae | CBS 133583T | Leaf of Posoqueria latifolia (Australia) | NR121555 | KC005803 | ||
| Toxicocladosporium protearum | CBS 126499T | Leaf of Protea burchellii (South Africa) | HQ599586 | HQ599587 | ||
| Toxicocladosporium pseudoveloxum | CBS 128775T | Leaf of Phaenocoma prolifera (South Africa) | JF499847 | JF499867 | ||
| Toxicocladosporium rubrigenum | CBS 124158T | Leaf of Eucalyptus camaldulensis (Madagascar) | FJ790287 | FJ790305 | ||
| Toxicocladosporium sp. | UTHSC DI-13-172 | Human, BAL fluid (USA) | LN834444 | LN834448 | ||
| Toxicocladosporium strelitziae | CBS 132535T | Leaf of Strelitzia reginae (South Africa) | NR111765 | JX069858 | ||
| Toxicocladosporium veloxum | CBS 124159T | Leaf of Eucalyptus camaldunensis (Madagascar) | FJ790288 | FJ790306 | ||
a
CBS, CBS-KNAW Fungal Biodiversity Centre, Utrecht, the Netherlands; FMR, Facultat de Medicina, Universitat Rovira i Virgili, Reus, Spain; UTHSC, Fungus Testing Laboratory at the University of Texas Health Science Center, San Antonio, TX, USA; T, ex-type strain.
b
BAL fluid, bronchoalveolar lavage fluid specimen; CSF, cerebrospinal fluid.