Table 1.

Summary of SNPs in fly

SNPs/MNPs	Chr2L	Chr2R	Chr3L	Chr3R	ChrX	Chr4
No. sites overall	1 109 349	916 178	110 5112	1 079 279	638 526	13552
Variant density(per kb)	44.2539	43.4374	45.0892	38.7591	28.6962	10.4878
No. in Splicing	1013	1130	962	1130	403	20
No. in UTR3	26 354	28 092	27 875	30 862	17 759	469
No. in UTR5	20 774	21 906	22 029	23 413	11 741	286
No. in upstreama	74 083	70 417	73205	74 496	39 628	822
No. in downstreamb	59 859	55128	60 261	59 652	34 243	744
No. in intergenic	351 864	238 941	349 703	302 888	206 443	3484
No. in intron	437 754	370 587	439 610	450 121	258 369	6271
No. in exon	137 657	129 977	131 467	136 717	69 940	1456
Synonymous	89 032	83 262	83 274	84 094	46 512	604
Nonsynonymous	48 058	46 159	47 688	52 017	23 224	842
Stop loss	65	75	57	83	26	0
Stop gain	502	481	448	523	178	10

^aUpstream: variant overlaps 1-kb region upstream of transcription start site.

^bDownstream: variant overlaps 1-kb region downstream of transcription end site.