Table 2.

Summary of indels in fly

INDELs	Chr2L	Chr2R	Chr3L	Chr3R	ChrX	Chr4
No. sites overall	236 300	195 139	243 431	225 411	177 697	3927
Variant density (per kb)	10.2785	9.2518	8.7421	8.0950	7.9859	3.0391
No. in splicing	155	153	140	172	82	6
No. in UTR3	6711	7318	7371	8063	7135	134
No. in UTR5	4293	4432	4712	4613	3596	79
No. in upstreama	16 877	16 368	16 841	16 417	10 128	241
No. in downstreamb	14 759	13 530	14 953	14 398	10 528	274
No. in intergetic	81 545	57 305	85 089	68 854	61 799	1137
No. in intron	108 098	92432	110 465	108 684	81 361	1991
No. in exon	3862	3601	3860	4210	3068	65
Synonymous	1353	1219	1103	1352	666	35
Nonsynonymous	2485	2351	2721	2832	2414	25
Stop loss	2	3	6	10	3	0
Stop gain	57	85	75	78	22	8

^aUpstream: Variant overlaps 1-kb region upstream of transcription start site.

^bDownstream: Variant overlaps 1-kb region downstream of transcription end site.