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P. acnes phages are highly similar to each other with no significant phylogenetic lineages observed. A phylogenetic tree of the 62 currently sequenced phage genomes was constructed based on the 7232 SNPs in the core regions. No significant lineages were observed. Nine groups of nearly identical phages are indicated, highlighting that the phages within each group belong to the same strain. Branches with bootstrap values <80 (based on 1000 resamplings) were collapsed.
