Table 1.
Statistics for the target enrichment experiment.a
Accession | Percent on-target | Mean (±SD) of low-copy locus coverage | Mean low-copy locus completeness (%)b | Mean exon completeness (%)c | Mean intron completeness (%)c | Percent chloroplast reads | Chloroplast coverage | Chloroplast completeness (%) | Percent mitochondrial reads | Mitochondrial coveraged | Mitochondrial completeness (%) |
Heuchera abramsii | 54.7 | 173.5× (±75.4×) | 99.8 | 100.0 | 99.6 | 7.8 | 31.8× | 98.3 | 1.0 | 4.5× | 44.0 |
H. acutifolia (herbarium specimen) | 44.5 | 206.0× (±76.5×) | 99.8 | 99.9 | 99.3 | 3.8 | 22.0× | 95.3 | 1.5 | 7.2× | 66.3 |
H. americana var. americana | 58.7 | 178.9× (±52.5×) | 99.9 | 99.9 | 99.5 | 3.7 | 14.8× | 96.6 | 1.1 | 3.7× | 52.7 |
H. elegans | 54.8 | 464.6× (±136.5×) | 99.9 | 100.0 | 99.9 | 3.4 | 38.6× | 99.7 | 0.4 | 4.7× | 47.1 |
H. grossulariifolia var. grossulariifolia | 59.6 | 262.3× (±70.3×) | 100.0 | 100.0 | 99.7 | 6.4 | 36.9× | 99.4 | 0.9 | 4.5× | 58.5 |
H. missouriensis | 60.5 | 586.1× (±112.1×) | 100.0 | 99.8 | 100.0 | 4.2 | 63.4× | 99.8 | 0.6 | 4.9× | 81.3 |
H. parishii | 47.3 | 922.9× (±236.3×) | 99.9 | 100.0 | 100.0 | 3.8 | 99.8× | 99.8 | 0.4 | 8.2× | 64.2 |
H. parviflora var. parviflora | 60.6 | 1225.7× (±242.9×) | 100.0 | 100.0 | 100.0 | 6.7 | 220.2× | 99.7 | 1.1 | 17.8× | 85.3 |
H. parvifolia var. nivalis | 52.8 | 714.9× (±168.1×) | 100.0 | 100.0 | 100.0 | 3.0 | 51.8× | 99.7 | 1.0 | 9.4× | 84.7 |
H. puberula | 55.0 | 440.4× (±93.5×) | 100.0 | 100.0 | 100.0 | 4.0 | 47.3× | 99.8 | 0.9 | 6.6× | 73.1 |
H. pulchella | 47.8 | 1303.8× (±254.1×) | 99.9 | 100.0 | 100.0 | 5.5 | 219.3× | 99.9 | 0.7 | 13.1× | 90.8 |
H. rubescens var. versicolor | 55.8 | 321.3× (±79.6×) | 99.9 | 100.0 | 99.9 | 2.4 | 17.6× | 99.5 | 0.4 | 3.5× | 42.6 |
H. villosa var. villosa | 62.6 | 361.9× (±76.6×) | 100.0 | 100.0 | 99.9 | 2.9 | 24.7× | 99.1 | 0.6 | 3.5× | 61.4 |
H. wootonii | 55.7 | 275.9× (±72.6×) | 99.8 | 99.9 | 99.6 | 2.8 | 17.9× | 99.1 | 0.9 | 4.8× | 60.2 |
Mitella pentandra | 49.8 | 238.9× (±91.7×) | 99.6 | 99.6 | 98.5 | 7.2 | 41.3× | 98.6 | 1.6 | 6.6× | 70.2 |
For all calculations, locus four has been omitted.
Locus completeness is based on coverage of the reference sequences.
Region completeness figures are based on the percent of the H. parviflora reference to which reads could be mapped.
Coverage of the mitochondrion only counts areas where reads could be mapped. If this calculation included the whole mitochondrion, it would be unfairly down-weighted by long regions (up to tens of thousands of bases) of uncertain origin that are not shared across species.