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. 2015 Jul 9;290(34):21154–21162. doi: 10.1074/jbc.M115.666438

TABLE 1.

DNA oligonucleotides used in this study

Name Sequence
Template 5′-ATGGGACGTGCTGTCAGTGCACTGTGACCGTCAGGATGACACGC-3′
Upstream 5′-GCGTGTCATCCTGACGGTCACAGTG-3′

FlapXa
    X = 12R 5′-CAGCAGCAGCAGCACTGACAGCACGTCCCAT-3′
    X = 14M 5′-CTCGATCAGCTACGCACTGACAGCACGTCCCAT-3′
    X = 30M 5′-CGCACTCTCTGTCAGACTCGATCAGCTACGCACTGACAGCACGTCCCAT-3′
    X = 30R 5′-CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACTGACAGCACGTCCCAT-3′
    X = 45M 5′-GGTTGTAAATAAGCTCTCACCCTCAGTCAGACTCGATATACAGCGCACTGACAGCACGTCCCAT-3′
    X = 45R 5′-CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACTGACAGCACGTCCCAT-3′
    X = 60M 5′-AGATGTCCGTGATTCGGTTGTAAATAAGCTCTCACCCTCAGTCAGACTCGATATACAGCGCACTGACAGCACGTCCCAT-3′
    X = 60R 5′-CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACTGACAGCACGTCCCAT-3′

a The 5′-flap region is underlined. The length of the flap (nucleotides) in the 5′-single flap species and sequence of the flap (either mixed sequence (M) or CAG repeat (R)) are indicated in the subscript (X).