Skip to main content
. 2015 Aug 19;143(7):074108. doi: 10.1063/1.4928635

FIG. 3.

FIG. 3.

Simulation time for various bin widths and number of bins. In this example, M = 107 and every propensity = 10−7 (the propensity sum equals one). The dashed line corresponds to the theoretical optimal bin width W=2 that minimizes the total search depth. The solid line corresponds to W = 16, which is the target bin width used in practice. The algorithm performs well over a fairly wide range of bin widths and number of bins. As the problem size increases, the optimal number of bins increases roughly proportional to M.