Table 1.
Average running time spent in calling indels for samples with low/high coverage
| Tool | Time | |
|---|---|---|
| Low Coverage (~6X) | High Coverage (~64X) | |
| GATK_UG | 16 minutes 43 seconds | 24 minutes 19 seconds |
| VarScan | 16 minutes 1 second | 84 minutes 02 seconds |
| Pindel | 25 minutes 36 seconds | 139 minutes 09 seconds |
| SAMtools | 11 minutes 26 seconds | 64 minutes 14 seconds |
| Dindel | 165 minutes 22 seconds | 1549 minutes 18 seconds |
| GATK_HC | 58 minutes 27 seconds | 91 minutes 13 seconds |
| Platypus | 3 minutes 36 seconds | 5 minutes 59 seconds |