Table 1. Occurrence of 29 concatenated 785 bp cytochrome b and D loop haplotypes among 10 gray fox and 3 island fox sampling locations.
| Sample location | n | A-4 | A-7 | A-23 | A-5 | A-6 | B-2 | B-3 | C-13 | C-14 |
|---|---|---|---|---|---|---|---|---|---|---|
| 1—Western Cascades | 14 | - | - | - | 7 | 1 | - | - | - | - |
| 2—North Coast | 34 | - | - | - | 1 | - | - | 2 | - | - |
| 3—Central coast | 10 | - | - | - | - | - | - | - | - | - |
| 4—Southern California | 2 | - | - | - | - | - | - | - | - | - |
| 5—Western Sierra/San Joaquin Valley | 13 | - | - | - | - | - | - | - | 5 | 1 |
| 6—Sacramento Valley | 27 | - | - | - | 1 | - | 2 | 4 | 5 | - |
| 7—Eastern Sierra Nevada | 5 | - | - | - | - | - | - | - | - | - |
| Nevada | 1 | - | - | - | - | - | - | - | - | - |
| Washington | 1 | - | - | - | - | - | - | - | 1 | - |
| 8—Island foxes | 11 | 4 | 5 | 2 | - | - | - | - | - | - |
| Santa Cruz Isl. | 4 | 4 | - | - | - | - | - | - | - | - |
| San Nicolas Isl. | 5 | - | 5 | - | - | - | - | - | - | - |
| San Clemente Isl. | 2 | - | - | 2 | - | - | - | - | - | - |
| Georgia | 27 | - | - | - | - | - | - | - | - | - |
| Total | 145 | 4 | 5 | 2 | 9 | 1 | 2 | 6 | 11 | 1 |
| Sample location | C-16 | D-2 | D-9 | D-10 | D-11 | D-12 | D-15 | D-16 | D-17 | E-1 |
| 1—Western Cascades | - | - | 3 | - | - | - | 3 | - | - | - |
| 2—North Coast | - | - | 21 | 2 | 3 | 4 | 1 | - | - | - |
| 3—Central coast | 1 | - | 1 | - | - | - | - | 6 | - | - |
| 4—Southern California | - | - | - | - | - | - | - | - | - | - |
| 5—Western Sierra/San Joaquin Valley | - | - | - | - | - | - | 4 | - | - | 3 |
| 6—Sacramento Valley | - | 1 | 5 | - | - | 1 | 5 | - | - | 3 |
| 7—Eastern Sierra Nevada | - | - | - | - | - | - | - | - | - | - |
| Nevada | - | - | - | - | - | - | - | - | 1 | - |
| Washington | - | - | - | - | - | - | - | - | - | - |
| 8—Island foxes | - | - | - | - | - | - | - | - | - | - |
| Santa Cruz Isl. | - | - | - | - | - | - | - | - | - | - |
| San Nicolas Isl. | - | - | - | - | - | - | - | - | - | - |
| San Clemente Isl. | - | - | - | - | - | - | - | - | - | - |
| Georgia | - | - | - | - | - | - | - | - | - | - |
| Total | 1 | 1 | 30 | 3 | 3 | 5 | 13 | 6 | 1 | 6 |
| Sample location | J-13 | K-15 | L-18 | M-8 | F-21 | G-Uci22 | H-19 | H-20 | H-Uci23 | I-22 |
| 1—Western Cascades | - | - | - | - | - | - | - | - | - | - |
| 2—North Coast | - | - | - | - | - | - | - | - | - | - |
| 3—Central coast | - | 1 | - | 1 | - | - | - | - | - | - |
| 4—Southern California | - | - | 2 | - | - | - | - | - | - | - |
| 5—Western Sierra/San Joaquin Valley | - | - | - | - | - | - | - | - | - | - |
| 6—Sacramento Valley | - | - | - | - | - | - | - | - | - | - |
| 7—Eastern Sierra Nevada | 5 | - | - | - | - | - | - | - | - | - |
| Nevada | - | - | - | - | - | - | - | - | - | - |
| Washington | - | - | - | - | - | - | - | - | - | - |
| 8—Island foxes | - | - | - | - | - | - | - | - | - | - |
| Santa Cruz Isl. | - | - | - | - | - | - | - | - | - | - |
| San Nicolas Isl. | - | - | - | - | - | - | - | - | - | - |
| San Clemente Isl. | - | - | - | - | - | - | - | - | - | - |
| Georgia | - | - | - | - | 6 | 2 | 3 | 6 | 5 | 5 |
| Total | 5 | 1 | 2 | 1 | 6 | 2 | 3 | 6 | 5 | 5 |
Haplotype names follow the convention that the cytochrome b fragment haplotype is named before the dash (by letter) and the D loop fragment haplotype is named following the dash (e.g., Sacks et al. 2010). All our D loop haplotypes were named with numerals, but the previously published D loop haplotypes use “Uci” in the name in keeping with previously assigned names (Bozarth et al. 2011). Numerals to left of sample names were for mapping purposes.