Table 2.

Distribution of copy number deleti ons on chromosomes

Chr	Deletions only
	Observed CNV in cases and controls	Ratio of case/control	p values	Observed CNV in cases and controls	Ratio of case/control	p values	Observed CNV in cases and controls	Ratio of case/control	p values
	1–10 kb			10–50 kb			>50 kb
1	1709	2.49539	0.8626	384	6.08127	0.3246	170	3.72008	0.2772
2	1642	3.13118	1.00E−04	509	6.81826	0.0332	237	1.80857	0.0413
3	1611	3.01258	0.7392	500	7.48133	0.9189	266	2.15987	0.8298
4	1904	2.77845	0.8719	520	7.42289	0.9481	251	1.86097	0.3325
5	1483	2.52167	0.0617	543	5.93514	0.0453	249	2.01002	0.6479
6	1440	2.82868	0.2306	362	6.5556	0.0581	118	3.96903	0.5206
7	1248	3.57254	0.7114	368	8.09861	0.6195	113	2.40595	0.8872
8	1388	2.79406	0.0007	371	7.95181	0.882	306	2.41128	0.4959
9	1195	2.66351	1.00E−04	391	7.41424	0.0011	495	1.69698	0.7884
10	1107	2.5371	0.2834	269	4.27999	0.5673	208	2.3065	0.0204
11	1183	2.28072	0.0046	282	6.60225	0.0169	138	2.7495	0.0148
12	893	2.49211	0.0323	152	6.80094	0.0364	35	2.42966	0.0054
13	932	2.23366	0.3331	272	4.2262	0.0271	94	1.51505	0.5151
14	741	2.25316	0.0106	221	8.66705	0.2036	118	2.3046	0.6436
15	623	2.4265	0.06	157	6.87918	0.0042	139	6.42084	0.0004
16	647	2.54643	0.5412	216	6.04562	0.0075	122	3.28046	0.1362
17	594	2.33232	0.2435	121	3.90574	0.3034	72	3.95823	0.0278
18	698	2.30858	0.9919	135	10.792	0.7888	74	1.79206	0.2417
19	405	2.39362	0.9983	121	3.42131	0.9996	44	2.54418	0.7119
20	427	1.88614	0.0405	78	5.83578	0.4637	24	3.52891	0.1368
21	345	1.94557	0.4154	85	4.8969	0.0999	82	1.77643	0.025
22	319	2.5579	0.0145	81	6.01787	0.0148	44	4.84881	0.0547