Table 4.
CNV-driven genes in lung SCC
| Chr | Gene | log2(copy number) | log2(FC) | Karyotype |
|---|---|---|---|---|
| 1 | FCGR3A | 1.13334 | 3.91384 | q23.3 |
| 1 | FCGR2B | 1.14834 | 2.52075 | q23.3 |
| 1 | AMY2A | 1.06865 | 2.50174 | p21.1 |
| 1 | AMY2B | 1.58959 | 1.94116 | p21.1 |
| 1 | CFH | 1.06624 | 1.47934 | q31.3 |
| 1 | LCE1D | 1.23411 | 1.41679 | q21.3 |
| 1 | CFHR3 | 1.20817 | 1.35526 | q31.3 |
| 3 | TP63 | 1.04434 | 3.18336 | q28 |
| 3 | MUC4 | 1.35013 | 2.38177 | q29 |
| 3 | MUC20 | 1.63525 | 2.25619 | q29 |
| 4 | TMPRSS11E | 1.11569 | 1.78099 | p16.3 |
| 5 | ZDHHC11 | 1.07998 | 1.03782 | q14.1 |
| 6 | HLA-DQA1 | 1.12618 | 1.73272 | p21.32 |
| 7 | ARHGEF5 | 1.07093 | 1.46641 | q35 |
| 16 | CES1 | 1.68967 | 2.06824 | q12.2 |
| 19 | LILRB5 | 1.08841 | 1.39769 | q13.42 |
CNV copy number variation, FC fold change