Table 1. Treatments, replicate numbers, and optimizations for each specimen swabbing event, chronological from left to right.
Specimen swabbing event | |||||
---|---|---|---|---|---|
A | B | C | D | E | |
Swab sequence | 5x6 | 15x6 | 25x6 | 25x6 | 25x6 |
Total swab strokes | 30 | 90 | 150 | 150 | 150 |
DNA extraction | PM | PM | PM | PM | MN |
TE rehydration | Yes | Yes | Yes | No | No |
Dilution & replicate # | 1:10: singlicate a | 1:10: singlicate a | 1:10: singlicate a | 1:10: duplicate a | No dilution; duplicate a |
Additional dilution & replicate # | - | - | - | 1:5: singlicate b | - |
Additional treatment & replicate # | - | - | GR singlicate c | GR singlicate d | - |
PM = PrepMan; MN = Macherey-Nagel DNA FFPE; GR = Genereleaser
an = 62;
bn = 47;
cn = 50
dn = 48