Table 3. MLVA-25 repeats for samples from Nigeria, Chad, and Cameroon available for this study.
Country/Strain | Town/ village | Region/State | vrrA | vrrB 1 | vrrB 2 | vrrC 1 | vrrC 2 | CG3 | pXO1 | pXO2 | Bam1 | Bam3 | Bam5 | Bam13 | Bam15 | Bam21 | Bam22 | Bam23 | Bam24 | Bam25 | Bam30 | Bam31 | Bam34 | Bam44 | Bam51 | Bam53 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chad 2 | N’djaména | Chari Baguirmi | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | -1 | -1 | 9 | 6 | 9 | 8 |
Chad 3 | Massakory | Chari Baguirmi | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | -1 | -1 | 9 | 6 | 9 | 8 |
Chad 4 | Dourbali | Chari Baguirmi | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | -1 | -1 | 9 | 6 | 9 | 8 |
Chad 6 | Am-Timan | Salamat | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | -1 | -1 | 9 | 6 | 9 | 8 |
Chad 10 | Bitkine | Guera | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | -1 | -1 | 9 | 6 | 9 | 8 |
Chad 11 | Mandelia | Chari Baguirmi | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | -1 | -1 | 9 | 6 | 10 | 8 |
Chad 12 | Bongor | Mayo Kebbi | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | -1 | -1 | 9 | 6 | 9 | 8 |
Chad 13 | Moîssala | Moyen-Chari | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | -1 | -1 | 9 | 6 | 9 | 8 |
Chad 15 | Karal | Chari Baguirmi | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | -1 | -1 | 9 | 6 | 9 | 8 |
Nigeria 1555 | N/A | Adamwa | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | 60 | 64 | 9 | 6 | 9 | 8 |
Nigeria 829 | N/A | Plateau | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | 60 | 64 | 9 | 6 | 9 | 8 |
Nigeria Gwandu | N/A | Kebbi | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | 60 | 64 | 9 | 6 | 9 | 8 |
Nigeria Lagos | N/A | Lagos | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 23 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | 60 | 64 | 9 | 6 | 9 | 8 |
Cameroon L58 | N/A | N/A | 8 | 16 | 8 | 57 | 21 | 2 | 6 | 6 | 13 | 21 | 6 | 24 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | 60 | 64 | 9 | 6 | 9 | 8 |
Cameroon L57 | N/A | N/A | 8 | 16 | 8 | 57 | 21 | 2 | 7 | 6 | 13 | 21 | 6 | 33 | 43 | 10 | 11 | 10.5 | 8 | 13 | 14 | 60 | 64 | 9 | 6 | 9 | 8 |