Table 4. Validation of gene transcription profiles by real-time PCR.
Expression pattern | Gene | Ratio by microarray analysis | Ratio by RT-PCR | ||||||
---|---|---|---|---|---|---|---|---|---|
0.5×MIC CYA | MBC CYA | MIC OLA | MBC OLA | 0.5×MIC CYA | MBC CYA | MIC OLA | MBC OLA | ||
Conserved | rrn | 0.96 | 0.96 | 0.96 | 0.92 | 1 | 1 | 1 | 1 |
Up-regulated | recA | 7.46 | 11.42 | 9.70 | 13.88 | 5.97 | 12.41 | 8.60 | 19.05 |
lexA | 4.07 | 4.54 | 4.30 | 4.68 | 2.62 | 2.53 | 3.18 | 2.29 | |
recN | 9.95 | 21.52 | 15.91 | 22.24 | 5.85 | 9.02 | 6.03 | 8.45 | |
sbmC | 2.24 | 2.74 | 4.27 | 2.91 | 2.54 | 2.70 | 2.38 | 2.17 | |
Down-regulated | rbsC | 0.88 | 0.41 | 0.72 | 0.35 | 1.22 | 0.49 | 0.85 | 0.49 |
treB | 0.94 | 0.36 | 0.65 | 0.35 | 1.16 | 0.40 | 0.83 | 0.32 | |
fliM | 0.89 | 0.45 | 0.53 | 0.48 | 1.29 | 0.46 | 0.79 | 0.49 |
0.5×MIC, MIC, and MBC indicate drug concentrations.