Table S4.
Details of dCAPs markers used for genetic mapping
| Experiment | Marker name | primer_F | primer_R | Restriction enzyme | Linkage group | Synteny block (6) |
| HIF_OxxWa_fine mapping | m128135 | TTCCATCCATGACTTGTAGACTGC | TAAAAATTTAGGAGTTTCCGATT | MseI | 6 | R |
| HIF_OxxWa_fine mapping | d2i11F | CACAAACTTGCCTAGACACAAGTTGA | AAACGTAGAACCTGAATCTGTTCTTACC | EcoRI | 6 | R |
| HIF_OxxWa_fine mapping | 629 | AAAAGCTGTGGAATGGGATG | GAACTGTTCGATTTTAACATTAGCTT | TaqI | 6 | R |
| HIF_OxxWa_fine mapping | c34692 | CTATACATTTATATGTTGGATTTAGC | TAGACCAACCCTGGTCTAATTATATCAAGACC | AluI | 6 | R |
| HIF_OxxWa_fine mapping | snpAT5g10110 | TTGGTTAATTTGACTAATCTTCTTCCAGCTAA | AAACTTCTCTCTCGAACATTCATAAGC | DdeI | 6 | R |
| HIF_OxxWa_fine mapping | m849 | TTGGAGGAAGGAGGAAAGCTCTCTG | GAAGAAAAGAAGCAAGAGAAGCA | DdeI | 6 | R |
| HIF_OxxJpa1_validation | dcaps09880 | CTGCGGTTTGCATCGGTGCAGGCTGC | GGCTTGGCTTTGGCTTCATATTCATGAGG | PstI | 6 | R |
| Production of NIL | SNP_135 | AGCAAAGCAAAATACTACTTGG | GAAGCCTCTGATGCTTCAGTTA | MseI | 1 | A |
| Production of NIL | SNP_1972 | TTACATATTAGTTCAATAAAAGTG | GAGGCTCAACACCCTTTAAACTCAATAGC | AluI | 1 | B |
| Production of NIL | SNP_4501 | CAATCACCATCTCGACCTTCATCGTC | CGTCTTGTTTATCTTCAACGGGAAGGCTA | DdeI | 2 | D |
| Production of NIL | SNP_468 | AGGAGATGAGAAACGGAG | AAGCTGTTCTTGATAATGTA | RsaI | 2 | E |
| Production of NIL | SNP_74 | ACAAAGAATCGGGAGCATGT | ACAATATAAGTAATGTTAGTGGC | DdeI | 3 | F |
| Production of NIL | SNP_1154 | AAAGTCTTCCTTGTGAGTAGAGAGACC | GGCTTGACGTTGCTCGTCAGAAGCTTGTTGT | EcoRI | 5 | L |
| Production of NIL | SNP_13146 | AAATCGCGATATATGAGACCTGAATCAGC | AGGATACAAAGAGAGAACAATGCTCCTGC | DdeI | 5 | N |
| Production of NIL | SNP_22377 | ACCATACCAAAGAACAATAACATGAG | CCGTCACGTCTCGACCTGCTCCTTTGTA | RsaI | 6 | V |