Table 1.
Mutagenic consequences of traversing 5ClC with several different DNA polymerases
Family | Polymerase | Domain | Species | Proofreading | % C→T induced by 5ClC |
A | Pol I (Klenow fragment Exo+) | Bacteria | E. coli | Yes | 4.4 ± 0.3 |
A | Pol I (Klenow fragment Exo−) | Bacteria | E. coli | No | 4.4 ± 0.3 |
A | T4 DNA polymerase | Viruses | T4 phage | Yes | 4.1 ± 0.2 |
A | Pol γ (gamma) | Eukaryota | H. sapiens | Yes | 3.5 ± 0.3 |
B | Pol ζ (zeta) | Eukaryota | S. cerevisiae | No | 3.4 ± 0.2 |
C | Pol III holoenzyme (in vivo)* | Bacteria | E. coli | Yes | 4.6 ± 0.6 |
D | PfuTurbo† | Archaea | P. furiosus | Yes | 5.8 ± 0.7 |
X | Pol β (beta) | Eukaryota | H. sapiens | No | 9.1 ± 0.6 |
Y | Pol η (eta) | Eukaryota | H. sapiens | No | 3.7 ± 0.7 |
RT | HIV RT | Viruses | HIV | No | 4.9 ± 1.2 |
A panel of DNA polymerases spanning all known polymerase families (A, B, C, D, X, Y, RT) and all life domains was used to extend a primer annealed to an M13 ssDNA genome containing one 5ClC lesion. Subsequently, the newly synthesized strand was specifically PCR amplified (Fig. 3C), and the PCR product was analyzed with the REAP assay to determine the amount of C→T transitions induced by 5ClC.
The result from Fig. 2C.
The average of the two results from Fig. 3B.