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. 2015 Aug 3;112(33):10485–10490. doi: 10.1073/pnas.1509097112

Table S1.

Strains used in this study

Strain name in text Description SRA accession no. Source
N16961 V. cholerae clinical isolate obtained in Bangladesh in 1975 (25)
E7946 Streptomycin resistant derivative of a V. cholerae clinical isolate obtained in Bahrain in 1978 (18)
2011EL-2320 V. cholerae clinical Isolate from the Haiti outbreak (16)
2011EL-1810 V. cholerae clinical Isolate from the Haiti outbreak (16)
2012EL-1410 V. cholerae clinical Isolate from the Haiti outbreak (16)
2010EL-1786 V. cholerae clinical Isolate from the Haiti outbreak (16)
2011EL-2321 V. cholerae clinical Isolate from the Haiti outbreak (16)
KS611 V. cholerae clinical Isolate from the Haiti outbreak (37)
2011EL-2320 ΔideA::KanR 2011EL-2320 containing an insertion/deletion mutation where the ideA gene was replaced with a KanR marker This study
2011EL-1810 ΔideA::KanR 2011EL-1810 containing an insertion/deletion mutation where the ideA gene was replaced with a KanR marker This study
2012EL-1410 ΔideA::KanR 2012EL-1410 containing an insertion/deletion mutation where the ideA gene was replaced with a KanR marker This study
2010EL-1786 ΔideA::KanR 2010EL-1786 containing an insertion/deletion mutation where the ideA gene was replaced with a KanR marker This study
2011EL-2321 ΔideA::KanR 2011EL-2321 containing an insertion/deletion mutation where the ideA gene was replaced with a KanR marker This study
KS611 ΔideA::KanR V. cholerae KS611 containing an insertion/deletion mutation where the ideA gene was replaced with a KanR marker This study
KS611 ΔideA V. cholerae KS611 containing an in-frame deletion of ideA as well as a lacZ::KanR mutation (the lacZ mutation was used as the selected marker during cotransformation) This study
E7946 ΔlacZ E7946 containing a deletion/insertion mutation where the lacZ gene was replaced with a SpecR marker This study
E7946 ICE-ideA+ A strain where the ICE from KS611 was conjugatively transferred into E7946 ΔlacZ This study
E7946 ICE-ΔideA A strain where the ICE from KS611 ΔideA was conjugatively transferred into E7946 ΔlacZ This study
SM10 (pMMB) E. coli SM10 strain harboring the pMMB empty vector (39)
E7946 (pMMB-ideA) E7946 harboring the pMMB-IdeA plasmid (generated by conjugating plasmid from an Sm10 donor into E7946) This study
E7946 (pMMB) E7946 harboring the pMMB empty vector This study
BL21 (pMMB-ideA) E. coli BL21 harboring the pMMB-IdeA plasmid This study
BL21 (pMMB) E. coli BL21 harboring the pMMB empty vector This study
KS493 V. cholerae clinical Isolate from the ICDDR, B SRS883111 This study
KS494 V. cholerae clinical Isolate from the ICDDR, B SRS883428 This study
KS495 V. cholerae clinical Isolate from the ICDDR, B SRS883429 This study
KS496 V. cholerae clinical Isolate from the ICDDR, B SRS883491 This study
KS490 V. cholerae clinical Isolate from the ICDDR, B SRS884567 This study
KS489 V. cholerae clinical Isolate from the ICDDR, B SRS884568 This study
KS492 V. cholerae clinical Isolate from the ICDDR, B SRS884569 This study
KS491 V. cholerae clinical Isolate from the ICDDR, B SRS884570 This study
KS503 V. cholerae clinical Isolate from the ICDDR, B SRS884571 This study
KS502 V. cholerae clinical Isolate from the ICDDR, B SRS884573 This study
KS512 V. cholerae clinical Isolate from the ICDDR, B SRS884574 This study
KS404 V. cholerae clinical Isolate from the ICDDR, B SRS884575 This study
KS508 V. cholerae clinical Isolate from the ICDDR, B SRS884576 This study
KS507 V. cholerae clinical Isolate from the ICDDR, B SRS884577 This study
KS340 V. cholerae clinical Isolate from the ICDDR, B SRS884578 This study
KS506 V. cholerae clinical Isolate from the ICDDR, B SRS884968 This study
KS342 V. cholerae clinical Isolate from the ICDDR, B SRS884969 This study
KS343 V. cholerae clinical Isolate from the ICDDR, B SRS884970 This study
KS405 V. cholerae clinical Isolate from the ICDDR, B SRS884971 This study
KS312 V. cholerae clinical Isolate from the ICDDR, B SRS884972 This study
KS406 V. cholerae clinical Isolate from the ICDDR, B SRS884973 This study
KS501 V. cholerae clinical Isolate from the ICDDR, B SRS884974 This study
KS344 V. cholerae clinical Isolate from the ICDDR, B SRS884977 This study
KS366 V. cholerae clinical Isolate from the ICDDR, B SRS884979 This study
KS248 V. cholerae clinical Isolate from the ICDDR, B SRS884980 This study
KS229 V. cholerae clinical Isolate from the ICDDR, B SRS884981 This study
KS407 V. cholerae clinical Isolate from the ICDDR, B SRS884982 This study
KS505 V. cholerae clinical Isolate from the ICDDR, B SRS884983 This study
KS242 V. cholerae clinical Isolate from the ICDDR, B SRS884984 This study
KS255 V. cholerae clinical Isolate from the ICDDR, B SRS884985 This study
KS227 V. cholerae clinical Isolate from the ICDDR, B SRS884986 This study
KS347 V. cholerae clinical Isolate from the ICDDR, B SRS884987 This study
KS348 V. cholerae clinical Isolate from the ICDDR, B SRS884988 This study
KS500 V. cholerae clinical Isolate from the ICDDR, B SRS884990 This study
KS350 V. cholerae clinical Isolate from the ICDDR, B SRS884991 This study
KS504 V. cholerae clinical Isolate from the ICDDR, B SRS884993 This study
KS509 V. cholerae clinical Isolate from the ICDDR, B SRS884994 This study
KS511 V. cholerae clinical Isolate from the ICDDR, B SRS884995 This study
KS517 V. cholerae clinical Isolate from the ICDDR, B SRS884996 This study
KS516 V. cholerae clinical Isolate from the ICDDR, B SRS884997 This study
KS510 V. cholerae clinical Isolate from the ICDDR, B SRS885000 This study
KS515 V. cholerae clinical Isolate from the ICDDR, B SRS885001 This study
KS408 V. cholerae clinical Isolate from the ICDDR, B SRS885002 This study
KS39 V. cholerae clinical Isolate from the ICDDR, B SRS885003 This study
KS409 V. cholerae clinical Isolate from the ICDDR, B SRS885004 This study
KS513 V. cholerae clinical Isolate from the ICDDR, B SRS885005 This study
KS514 V. cholerae clinical Isolate from the ICDDR, B SRS885006 This study
KS393 V. cholerae clinical Isolate from the ICDDR, B SRS885007 This study
KS392 V. cholerae clinical Isolate from the ICDDR, B SRS885008 This study
KS396 V. cholerae clinical Isolate from the ICDDR, B SRS885010 This study
KS399 V. cholerae clinical Isolate from the ICDDR, B SRS885012 This study
KS398 V. cholerae clinical Isolate from the ICDDR, B SRS885013 This study
KS401 V. cholerae clinical Isolate from the ICDDR, B SRS885014 This study
KS405 ΔideA KS405 containing an in-frame deletion of ideA as well as a lacZ::SpecR (the lacZ mutation was the selected marker for cotransformation) This study
KS507 ΔideA KS507 containing an in-frame deletion of ideA as well as a lacZ::SpecR (the lacZ mutation was the selected marker for cotransformation) This study
KS399 ΔideA KS399 containing an in-frame deletion of ideA as well as a lacZ::SpecR (the lacZ mutation was the selected marker for cotransformation) This study
KS404 ΔideA KS404 containing an in-frame deletion of ideA as well as a lacZ::SpecR (the lacZ mutation was the selected marker for cotransformation) This study
KS495 ΔideA KS495 containing an in-frame deletion of ideA as well as a lacZ::SpecR (the lacZ mutation was the selected marker for cotransformation) This study
E7946 ΔdprA E7946 containing an in-frame deletion in dprA as well as a KanR cassette in place of VC1807, a frame-shifted transposase (the VC1807 mutation was the selected marker during cotransformation) This study
E7946 ΔdprA E7946 containing an in-frame deletion in dprA as well as ΔlacZ::SpecR (the lacZ mutation was the selected marker during cotransformation) This study
E7946 ICE-ideA+ ΔdprA E7946 ICE-ideA+ containing an in-frame deletion of dprA and a lacZ::KanR mutation (this mutation in lacZ replaces the SpecR cassette present in the parent isolate and was the selected marker for cotransformation) This study
E7946 ICE-ΔideA ΔdprA E7946 ICE-ΔideA containing an in-frame deletion of dprA and a lacZ::KanR mutation (this mutation in lacZ replaces the SpecR cassette present in the parent isolate and was the selected marker for cotransformation) This study