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. 2015 May 4;31(17):2794–2800. doi: 10.1093/bioinformatics/btv276

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© The Author 2015. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 1. — Workflow diagram for the steps listed in Section 2 depicts the tools required to complete each step. This also demonstrates the modularity of the current system. Work-in-progress (WIP) branches from the parent SHA (a checksum of the content) are created on save. If no other commits have edited this study since the parent SHA, WIP branches are merged to master and commits are pushed to the mirror, then to GitHub. If the study has been edited since the parent commit, commits will be held on a WIP branch and merge conflict resolution is required