Table 1. Estimated overall proportion of clustering for observed, incomplete-observed and imputed-complete datasets.

Thres	Clus, Obs	# Del	Clus, In-Obs	Clus, Impute-Com	Cov, In-Obs	Cov, Impute-Com
0.1	0.043	50	0.039	0.043	83%	94%
		100	0.036	0.043	66%	89%
		200	0.024	0.037	30%	61%
0.15	0.13	50	0.11	0.13	48%	91%
		100	0.099	0.13	16%	85%
		200	0.059	0.10	1.4%	54%

Thres stands for threshold; Clus for clustering; Obs for observed data; # Del for number of deleted sequences; In-Obs for ncomplete-observed data; Impute-Com for imputed-complete data; Cov stands for coverage. Clustering assessed at the 0.10 and 0.15 thresholds, with varying number of deleted sequences (m = 50, 100, or 200).