Table 5. Numbers are the run time (in seconds, s, or minutes, m) of HDAT, using parallel computation in R, under different numbers of subjects, SNPs, and permutations.

		Run time with 1000 or 5000 permutations
No. of subjects	No. of SNPs	1000	5000
1000	5000	33 sec.	76 sec.
1000	19948	122 sec.	163 sec.
4864	1000	504 sec.	2473 sec.
4864	5000	19 min.	44 min.
4864	19948	72 min.	107 min.