Table 4.
Comparisons of mutational changes, number of transitions (Ts) and transversions (Tv), synonymous (S), and non-synonymous (N) substitutions per gene of protein coding chloroplast genes between M. yunnanensis and M. balansae.
| Gene | Ts | Tv | S | N | |
|---|---|---|---|---|---|
| Photosynthetic apparatus | psaA | 2 | 2 | 1 | 3 |
| psaB | 0 | 1 | 1 | 0 | |
| psaJ | 2 | 0 | 2 | 0 | |
| psbA | 1 | 0 | 0 | 1 | |
| psbL | 1 | 0 | 0 | 1 | |
| psbT | 1 | 1 | 2 | 0 | |
| petA | 1 | 0 | 1 | 0 | |
| ycf4 | 0 | 1 | 0 | 1 | |
| Total | 8 | 5 | 7 | 6 | |
| Photosynthetic metabolism | atpA | 1 | 0 | 1 | 0 |
| atpB | 1 | 1 | 1 | 1 | |
| atpE | 3 | 1 | 4 | 0 | |
| atpF | 0 | 1 | 0 | 1 | |
| atpI | 1 | 0 | 1 | 0 | |
| ndhA | 0 | 2 | 0 | 2 | |
| ndhD | 1 | 0 | 0 | 1 | |
| ndhE | 1 | 1 | 1 | 1 | |
| ndhF | 2 | 1 | 3 | 0 | |
| ndhG | 3 | 0 | 1 | 2 | |
| ndhH | 1 | 0 | 1 | 0 | |
| ndhK | 2 | 1 | 1 | 2 | |
| rbcL | 0 | 2 | 1 | 1 | |
| Total | 16 | 10 | 15 | 11 | |
| Gene expression | rpl2 | 1 | 0 | 1 | 0 |
| rpl14 | 2 | 2 | 2 | 2 | |
| rpoA | 0 | 1 | 0 | 1 | |
| rpoB | 1 | 1 | 0 | 2 | |
| rpoC1 | 1 | 0 | 1 | 0 | |
| rpoC2 | 4 | 3 | 5 | 2 | |
| rps3 | 1 | 1 | 1 | 1 | |
| rps4 | 1 | 0 | 1 | 0 | |
| rps14 | 1 | 0 | 1 | 0 | |
| rps18 | 0 | 1 | 0 | 1 | |
| Total | 12 | 9 | 12 | 9 | |
| Other Genes | ycf1 | 6 | 12 | 6 | 12 |
| ycf2 | 3 | 6 | 4 | 5 | |
| ccsA | 0 | 2 | 1 | 1 | |
| cemA | 1 | 1 | 1 | 1 | |
| matK | 2 | 2 | 2 | 2 | |
| Total | 48 | 47 | 48 | 47 | |