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. 2015 Aug 25;10(8):e0136506. doi: 10.1371/journal.pone.0136506

Table 4. Pathways contained in the change-then-stable category.

Tendency Pathways P-value Differentially expressed genes
1 Fat digestion and absorption 7.04E-03 PPARA,PPAP2A,FABP2, PLA2G12B, APOB, APOA1
PPAR signaling pathway 1.68E-04 APOA1, FABP4, ACSL5, PPARA, APOA1, FABP6, ACSBG2, FABP2, FABP4, RXRG
Ether lipid metabolism 3.77E-02 PPAP2A, PLD1, PLA2G12B, PLB1
Metabolic pathways 1.73E-04 NDUFS4, NDUFS5, PLB1, ALPL, CYP4F18, FUT9, GOT1, RFK, GGT5, LCT, POLE4, ASAH2, NDUFS1, COX6A1, NME3, CYP2R1, CYP27B1, COX5A, NDUFS6, ALPI, INPP5J, UCK2, NDUFB2, COX7C, GCDH, LCT, PGP, ATP6V1H, SAT2, GCH1, FASN, UQCRQ, LCMT2, NDUFA11, ACLY, ACSL5, NDUFB3, ACLY, COX6B1, NDUFA4, POLR2J, THTPA, PPAP2A, PLD1, UROD, ACSBG2, LIPASE, DBH, COX7B, ACACA, FBP2, ODC1, NT5C2, PHOSPHO1, LPIN1, GDA, URAH, COX6B1, LIAS, DCTD, GCK, PLA2G12B, DTYMK
Fatty acid biosynthesis 2.36E-02 FASN, ACACA
Ribosome 4.42E-14 RPS27L, RPS25, RPS15A, RPL28, RPS27A, RPS27RT, MRPS16, RPS12, RPS29, RPL26, RPS23, MRPS17, MRPS21, RPS27RT, RPL32, RPL35, RPS5, RPL13A, RPL37, RPL17, RPS10, RPL35A, RPL7A, RPS28, RPS19
Proteasome 3.37E-02 PSMB6, SHFM1, PSMB4, PSMB9
Vitamin digestion and absorption 3.37E-02 APOA1, APOA1, PLB1, APOB
Folate biosynthesis 1.38E-02 ALPI, GCH1, ALPL
Oxidative phosphorylation 3.31E-07 COX7A2, NDUFS1, COX6A1, COX5A, NDUFS6, NDUFB2, COX7C, ATP6V1H, UQCRQ, NDUFA11, NDUFB3, COX6B1, NDUFA4, COX7B, COX6B1, NDUFS4, NDUFS5
Alzheimer's disease 8.00E-05 NDUFS4, NDUFS5, ERN1, COX7A2, NDUFS1, COX6A1,COX5A,NDUFS6, NDUFB2, COX7C, APOA1, UQCRQ, NDUFA11, NDUFB3, COX6B1, NDUFA4, COX6B1, COX7B
Parkinson's disease 1.38E-05 COX6B1,NDUFS4,NDUFS5,COX5A, COX7A2,NDUFS1,COX6A1,UQCRQ, NDUFS6,NDUFB2,COX7C, COX7B, NDUFA11, NDUFB3, COX6B1, NDUFA4
Non-alcoholic fatty liver disease (NAFLD) 1.36E-06 COX7B,COX6B1,NDUFS4,ERN1,NDUFS5,JUN, COX7A2, COX6A1, COX5A, NDUFS6, NDUFB2, COX7C, UQCRQ, NDUFA11, NDUFB3, COX6B1, NDUFA4, PPARA
Huntington's disease 1.85E-04 COX6B1, NDUFA4, POLR2J, COX7B, COX6B1, NDUFS4, NDUFS5, COX7A2, NDUFS1, COX6A1, COX5A, NDUFS6, NDUFB2, COX7C, UQCRQ, NDUFA11, NDUFB3
Cardiac muscle contraction 3.89E-06 ACTC1, COX6B1, COX7B, COX6B1, TNNC2, COX7A2, COX6A1, COX5A, TPM1, COX7C, MYH6, ATP1B1, MYL4, ACTC1, TNNT2, UQCRQ
Dilated cardiomyopathy 4.86E-03 TNNT2, ITGA6, ACTC1, TNNC2, IGHV9, DES, ITGB4, TPM1, ITGB3, MYH6, ITGA6, ACTC1
Hypertrophic cardiomyopathy (HCM) 7.40E-03 ITGA6, ACTC1, TNNT2, ITGA6, ACTC1, TNNC2, DES, ITGB4, TPM1, ITGB3, MYH6
Small cell lung cancer 1.36E-02 RXRG,FHIT, RXRG,FHIT, TRAF5, ITGA6, CDK4, CDK4, ITGA6, LAMC3, MYC
Pyrimidine metabolism 2.88E-02 POLE4, NME3, UCK2, POLR2J, NT5C2, DCTD, DTYMK
6 MicroRNAs in cancer 2.39E-03 CDKN1B, SOX12, CYP24A1, CD44, BMF, FSCN1
Circadian rhythm—mammal 2.85E-02 PRKAG3
Rheumatoid arthritis 3.20E-02 ANGPT1, H2-EA-PS, H2-EB2
Asthma 3.55E-02 H2-EB2, H2-EA-PS
Staphylococcus aureus infection 2.67E-02 H2-EA-PS, H2-EB2, ITGAX
Cell cycle 4.97E-02 CDKN1B,STAG1,MCM6
Purine metabolism 3.10E-02 NT5C2, ENTPD2, PDE1B, PDE6D
Hematopoietic cell lineage 3.38E-02 ITGAX, CD44, H2-EB2
Leishmaniasis 3.85E-02 ITGAX, H2-EA-PS, H2-EB2
ECM-receptor interaction 3.85E-02 COL6A6, CD44, ITGA11