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. 2015 Aug 25;10(8):e0136506. doi: 10.1371/journal.pone.0136506

Table 5. Pathways contained in the stable-then-change category.

Tendency Pathways P-value Differentially expressed genes
3 Retinol metabolism 2.09E-02 BCMO1,UGT1A5
Folate biosynthesis 4.11E-02 ALPL
Other types of O-glycan biosynthesis 1.02E-02 B4GALT1, UGT1A5
Glycosaminoglycan biosynthesis—keratan sulfate 2.39E-03 B3GNT7, B4GALT1
4 Biosynthesis of unsaturated fatty acids 3.18E-02 ACOT7, ACOT1, ACOT3
Metabolic pathways 4.55E-02 CYP3A25,ALOX5,ACSS1,CYP3A1,PRODH,LPIN1,GAL3ST1,TPI1, CKM,CBR1,PKM,CYP17A1,NME2,POLR2H,PGAM2,AK5,CKMT2,GFPT2,CKM,DHODH,PCYT1B,LAO1, PCK1,LDHA,NDUFV1,PTGDS, PISD,ALDOA,IMPA1,GLS,GADL1, PIGV,XYLT1,IDH2,GADL1,AMPD, HK1, PHOSPHO1
Thyroid hormone synthesis 1.40E-05 HSPA5,HSPA5,HSPA5,PDIA4, HSPA5,HSPA5,HSPA5,HSP90B1, ATP1A3,HSPA5,HSPA5
Ovarian steroidogenesis 3.96E-02 ACOT3,ALOX5, CYP17A1, ACOT1, IGF1R
Protein processing in endoplasmic reticulum 4.99E-07 HSPA5, PDIA4, CALR, HSPA5, HSPA5, HSPA5, HSP90B1, HSPA5, PDIA6, HSPA5, HYOU1, DNAJB11, HSPA5, SEC31A, DERL1, CALR, HSPA5, CALR, SSR1
Arginine and proline metabolism 1.64E-02 CKM, GLS, PRODH, CKM, CKMT2
Protein export 2.30E-07 HSPA5, HSPA5, HSPA5, HSPA5, HSPA5, HSPA5, HSPA5, HSPA5
Biosynthesis of amino acids 3.23E-02 PGAM2, ALDOA, IDH2, TPI1, PKM
Glycolysis/gluconeogenesis 1.89E-04 PKM, PGAM2, PCK1, LDHA, ALDOA, HK1, ACSS1, TPI1
Carbon metabolism 1.57E-02 TPI1, PKM, PGAM2, ALDOA, IDH2, HK1, ACSS1
Proximal tubule bicarbonate reclamation 1.59E-02 SLC9A3, PCK1, GLS, ATP1A3
Pyruvate metabolism 2.10E-02 ACSS1, PKM, PCK1, LDHA
Chemical carcinogenesis 3.96E-02 GSTM5, CYP3A25, CYP3A13, CBR1, GSTO1
Metabolism of xenobiotics by cytochrome P450 3.83E-02 GSTO1, GSTM5, CYP3A25, CYP3A13, CBR1
p53 signaling pathway 3.12E-02 GADD45G,VAT1L,IGFBP3,GADD45B,ZMAT3
PI3K-Akt signaling pathway 3.39E-02 DDIT4,VAT1L, IGFBP3, GADD45B, ZMAT3
Cardiac muscle contraction 3.00E-03 MYH6,RYR1,MYH7,ATP2A1,MYH6, TPM1, TNNC2, ACTC1, ATP1A3
Dilated cardiomyopathy 5.50E-04 ACTC1, MYH6, RYR1, MYH7, TTN, TITIN, ATP2A1, MYH6, TPM1, TNNC2, ACTB, SGCG
Hypertrophic cardiomyopathy (HCM) 2.97E-04 ACTB, SGCG, ACTC1, MYH6, RYR1, MYH7, TTN, TITIN, ATP2A1, MYH6, TPM1, TNNC2
Prion disease 8.71E-07 HSPA5,HSPA5,HSPA5,HSPA5,C7,HSPA5,EGR1,HSPA5,HSPA5,HSPA5
Viral myocarditis 9.13E-07 MYH4,MYH4,ACTB,SGCG,MYH6,MYH4, MYH13, MYH7, MYH2, MYH1, EIF4G3, MYH2, MYH4, MYH6, MYH4, MYH4, MYH4
Antigen processing and presentation 2.65E-05 CALR, HSPA5, HSPA5, HSPA5, HSPA5, HSPA5, HSPA5, CALR, HSPA5, CALR, HSPA5
Chagas disease 3.32E-02 CALR, GNA14, CALR, IRAK1, JUN, CALR, TLR13
Arrhythmogenic right ventricular cardiomyopathy (ARVC) 4.57E-02 ACTB,SGCG,RYR1,ACTN3,ATP2A1,DSG2
HIF-1 signaling pathway 2.08E-02 EGLN3, IGF1R, LDHA, CAMK2D, EPO, ALDOA, HK1
Tight junction 1.37E-06 MYH6, CLDN4, MYH4, MYH13, MYH7, ACTN3, MYH2, MYH1, MYH2, MYLPF, MYH4, MYH6, MYH4, MYH4, MYH4, MYH4, MYH4, ACTB, CLDN4, MYLPF