TABLE 1.
Comparison of isolate PFGE type to in silico MLST
Isolate PFGE type | No. of isolates observed with in silico MLST: |
|||||||||
---|---|---|---|---|---|---|---|---|---|---|
2 | 257 | 296 | 323 | 5 | 6 | 635 | 87 | 9 | Novel | |
CU-11-282 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 |
CU-11-320 | 0 | 0 | 0 | 0 | 36 | 0 | 0 | 0 | 0 | 0 |
CU-11-326 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 |
CU-182-173 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | 0 | 0 | 0 |
CU-258-322 | 0 | 0 | 0 | 0 | 0 | 7 | 0 | 0 | 0 | 0 |
CU-258-323 | 0 | 0 | 0 | 0 | 0 | 8 | 0 | 0 | 0 | 0 |
CU-258-69 | 0 | 0 | 0 | 0 | 0 | 18 | 0 | 0 | 0 | 0 |
CU-259-322 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 |
CU-262-318 | 3 | 1a | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CU-262-319 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CU-262-334 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CU-262-79 | 21 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CU-294-321 | 0 | 0 | 0 | 11 | 0 | 0 | 0 | 0 | 0 | 0 |
CU-296-330 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 |
CU-40-96 | 0 | 0 | 0 | 0 | 12 | 0 | 0 | 0 | 0 | 0 |
CU-55-266 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CU-57-267 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 12 | 0 | 0 |
CU-8-340 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 |
CU-8-96 | 0 | 0 | 0 | 0 | 19 | 0 | 0 | 0 | 0 | 1b |
Sequence type 257 differs from sequence type 2 only in the ldh allelic type.
The novel sequence type differs from sequence type 5 only in the dat allelic type.