Table 2. Comparison with other prediction methods for three-way junctions.
The RNAJAG results are taken from [30] and were obtained with a different graph model. The RMSD values are, therefore, not directly comparable. Missing data indicate that the default server settings were unable to handle the request. The 4GXY four-way junction is represented by two three-way junctions. For each technique, 50 samples were requested.
| PDB ID | GARN | MCSym | Farna | NAST | iFoldRNA | RNAJAG | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Min | Max | Min | Max | Min | Max | Min | Max | Min | Max | Min | |
| 1E8O | 3.75 | 9.07 | 1.65 | 11.52 | 4.12 | 11.96 | 5.57 | 9.82 | 6.45 | 10.60 | – |
| 4FE5 | 2.79 | 4.77 | – | – | 1.23 | 5.87 | 1.95 | 12.35 | 4.80 | 11.12 | – |
| 4QJH | 4.15 | 7.02 | – | – | 2.41 | 12.40 | 9.24 | 12.38 | 7.35 | 17.16 | – |
| 1LNG | 7.19 | 7.19 | 3.76 | 6.85 | 3.02 | 10.31 | 6.05 | 36.56 | 3.79 | 9.67 | 9.04 |
| 4WFL 1 | 6.79 | 6.79 | – | – | 3.24 | 8.34 | 14.01 | 17.24 | 8.98 | 17.57 | – |
| 4WFL 2 | 5.65 | 8.83 | – | – | 4.64 | 12.25 | 11.26 | 14.40 | 7.46 | 14.11 | – |
| 4QK8 1 | 5.12 | 7.87 | – | – | 2.94 | 8.64 | 5.16 | 10.68 | 6.21 | 13.25 | – |
| 4QK8 2 | 3.95 | 8.29 | – | – | 3.82 | 10.13 | 8.62 | 12.20 | 5.35 | 14.75 | – |
| 1MFQ | 4.70 | 5.71 | 2.87 | 6.06 | 5.31 | 7.5 | 9.26 | 19.71 | 18.16 | 27.13 | 5.26 |
| 4GXY 3-way | 9.76 | 9.76 | – | – | 2.92 | 6.55 | 4.69 | 12.93 | – | – | – |
| 4GXY 4-way | 9.57 | 13.31 | – | – | 6.50 | 11.87 | 16.55 | 39.84 | – | – | – |