Abstract
Here, we report the draft genome sequence of Dysgonomonas macrotermitis strain JCM 19375T, which was isolated from the hindgut of a fungus-growing termite, Macrotermes barneyi. The genome information reveals the role of this strain in lignocellulose degradation and adaptation to the gut environment.
GENOME ANNOUNCEMENT
The termite contains various microorganisms that symbiotically exist in the hindgut. Metagenomic analysis has revealed a large diverse set of glycoside hydrolyase (GH) genes presenting in the hindgut of a higher termite, which may play an important role in lignocellulose degradation (1). The genus Dysgonomonas comprises seven species with validly published names: D. gadei, D. capnocytophagoides, D. mossii, D. hofstadii, D. oryzarvi, D. termitidis, and D. macrotermitis (2–8). The first four species are all from humans, and the latter three are from microbial fuel cell and termite guts. D. macrotermitis, a novel species of the genus Dysgonomonas, is the second most dominant bacterium in the hindgut of a fungus-growing termite, Macrotermes barneyi (8). To investigate the symbiotic roles of the strain, its genome sequence was analyzed.
The genome of the strain was sequenced using Illumina MiSeq. A total of 2,809,508 reads were assembled into 78 contigs, with an N50 length of 149,547 bp, and the largest contig length was 790,807 bp. This assembly resulted in a draft genome sequence of 4,655,756 bp and a G+C content of 38.54%. Together, they contain 3,870 coding sequences (CDSs), 44 tRNA genes, and 3 complete rRNA operons.
We assessed the potential role of D. macrotermitis in lignocellulose digestion by screening the CDSs against the CAZy database (9). Preliminary analyses revealed the presence of genes for cellulolytic and hemicellulolytic enzymes in the genome sequence of D. macrotermitis. There were various genes encoding glucosidase of glycoside hydrolase 2 (GH2), GH3, and GH97; genes encoding glucanase of GH5, -16, and -26; genes encoding xylanases of the GH10, -11, and -43 families; genes encoding α- and β-xylosidases of GH43, -3, -39, and -31; and genes encoding α- and β-galactosidase of GH2, -27, -35, -36, -42, -43, -53, and -97. In addition, the genome had several genes coding α- and β- glucuronidase, arabinofuranosidase, arabinosidase, and amylase. These results suggest the potential role of the strain in decomposing lignocellulose and providing nutrition to the host termite in the hindguts of fungus-growing termites.
Nucleotide sequence accession numbers.
This whole-genome shotgun project has been deposited in DDBJ under the accession numbers BBXL01000001 to BBXL01000078.
ACKNOWLEDGMENTS
This work was supported by grants from the National Basic Research Program of China (973 program: 2011CB707402 to J.N.) and the National Natural Science Foundation of China (grants 31272370 and 30870085).
Footnotes
Citation Sun X, Yang Y, Zhang N, Shen Y, Ni J. 2015. Draft genome sequence of Dysgonomonas macrotermitis strain JCM 19375T, isolated from the gut of a termite. Genome Announc 3(4):e00963-15. doi:10.1128/genomeA.00963-15.
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